PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01444g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 767aa MW: 85427.3 Da PI: 6.9239 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 652 | 677 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C +sF +k +L+ H r+ + Peinf101Scf01444g00019.1 652 HRCDieGCRMSFQTKVELQLHKRNrC 677 789999****************9877 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 676 | 699 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F+++ + +H+r+H Peinf101Scf01444g00019.1 676 RCPieGCGKKFTSHKYALVHQRVH 699 69999*****************99 PP | |||||||
3 | zf-C2H2 | 11.8 | 0.00077 | 735 | 761 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H Peinf101Scf01444g00019.1 735 YKCKveGCGLTFRFVSDYSRHRRKtgH 761 99*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 644 | 674 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 10 | 652 | 674 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.024 | 675 | 699 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.74E-6 | 675 | 712 | No hit | No description |
PROSITE profile | PS50157 | 12.175 | 675 | 704 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.8E-6 | 676 | 703 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 677 | 699 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.9E-10 | 704 | 729 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0023 | 705 | 729 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 705 | 734 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 707 | 729 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.93E-10 | 715 | 757 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-11 | 730 | 758 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.265 | 735 | 766 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 735 | 761 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 737 | 761 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
TCLWNTEFPL HAVDTMERNG GHFLDHDEVS MSAQPSGFAV SPHEGQKSQS HHSLDTENAA 60 LTSKVELEKV WDVSRGSLRP HIFCVEHAIQ TEELLHTKGG ANVLVICHSD FQKIRAHAAI 120 VAEEIGTTFK YNEISLANAS QGHLSLIDLA IEDEEQDKYA EDWTLKLNIN LRHCVKAQRN 180 CPLKKLKHAM ILGGLFSDTT PRSHSSSLDW QSRKVRSRRK CNNSTESTSL AHLQIEKVLD 240 SGSTVDKQNA RKGNITIQYS RKKYKFKSCS PAEVTRVIVD PFNVSIEEVL VADAKTMGTT 300 LLRDENAGSS SSGERFFSAS DGKPGLQHEH EMVLVNRDQN GNLLASQDAE LLVTTLMVEF 360 DEANGEICTS EKLALEDKTC DTNSTSCHTE RKSTGPETSG ETEIAHLTAP TCTTISVVQS 420 TANNENLKEN RDMTESGIRN KSAQPKEANF ERDDRGADDK AIMTRSLVPV NSSGSCTDGP 480 SRSSNEQIED QIPEQFASGS EASDSESLQN SVEQEIQIDN ADQDVAVSDH VKLIEEACPS 540 AGSLEVMRET SSLEHSQIES DDDTSSAIVS RRAAKSGGKR RRELDLLTDD GCNIVGFVKS 600 PCEGLRPRAR KNVPESRADT KKPLEEKPTG KKVKRSLQSS NKDKKEQRKG THRCDIEGCR 660 MSFQTKVELQ LHKRNRCPIE GCGKKFTSHK YALVHQRVHQ NDRPLKCPWK GCTMTFKWAW 720 ARTEHLRVHT GERPYKCKVE GCGLTFRFVS DYSRHRRKTG HYVDAAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 2e-54 | 650 | 767 | 21 | 138 | Lysine-specific demethylase REF6 |
6a58_A | 2e-54 | 650 | 767 | 21 | 138 | Lysine-specific demethylase REF6 |
6a59_A | 2e-54 | 650 | 767 | 21 | 138 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016451016.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 | ||||
Refseq | XP_016451017.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A1S3YGF2 | 0.0 | A0A1S3YGF2_TOBAC; probable lysine-specific demethylase ELF6 | ||||
STRING | XP_009589507.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4835 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-64 | C2H2 family protein |