PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g06029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 246aa    MW: 27174.1 Da    PI: 8.2866
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g06029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20127161135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Peinf101Scf01427g06029.1 127 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 161
                               ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
SMARTSM004015.7E-19121173IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89121157IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13124162No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17125161IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.02E-13126158No hitNo description
PROSITE patternPS003440127152IPR000679Zinc finger, GATA-type
PfamPF003205.6E-18127161IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMHRCSSSCH GSMVGACSCG MFHSQNTTTS SAFSMLFSHN PTFDHEYSEN MYSFAPSPSS  60
NVDCTLSLGT PSTRLTNDNE KRVQSRMSNF WDILQPKKHT PSPPQKSTRG GSNGNTNSND  120
PLVARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRASAAAATA NSGGVDTHHM  180
INTTTSSWVH HHSQVPQKMP CFSSAAYGNE FRFIDDDERD SDAGIPFLPW RFSVADRPSL  240
VHDFTR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603282.11e-136PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC794e-56GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A1S4CIH21e-135A0A1S4CIH2_TOBAC; GATA transcription factor 19-like
STRINGXP_009603282.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-54GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]