PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g00001.1
Common Name14.PETUNIA.9
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 549aa    MW: 60765.5 Da    PI: 5.3736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.2e-1011855472374
                      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs
  Peinf101Scf01427g00001.1 185 VDELIRFAECFETNAFQLAHVILARLNQRlRSASGKPLQRAAFYFKEALQAQLAG------STRQTRPSSSSDVIQTIKSYKIFS 263
                               678*************************99*************************......778888999999************ PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLa 166
                               ++sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++e+    +p +RiT+++++e   + e + ++e+L+
  Peinf101Scf01427g00001.1 264 NISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAESrkavTPVFRITALVPEE--YAVESRLIRENLT 346
                               ************************************************8884434449**********66..99999******** PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhn 249
                               +fA+el++ fe+++++ +++e l+++++++  gE++aV l+ +++r +          + +++ +++++P+vvv+v++e  + ++
  Peinf101Scf01427g00001.1 347 QFARELNIGFEIDFVLIRTFELLSFKSIKFMDGEKTAVLLSPAIFRRV------G---SGFVSDLRRVNPNVVVHVDSEglMGYG 422
                               **********************************************98......3...48*******************87788* PP

                      GRAS 250 sesFlerflealeyysalfdsl.eaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                               ++sF + +++ le+ys+l++sl +a+++  +   ++++k+E ++l ++iv++va+ g++    +   ++W+e++ +aGF+pv ls
  Peinf101Scf01427g00001.1 423 TASFRQTVIDGLEFYSTLLESLeAANIGGGNncgDWMRKIESFVLFPKIVELVAAIGRR----NGGGGSWKEAVVAAGFRPVGLS 503
                               **********************88899988889999*********************96....999******************* PP

                      GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  Peinf101Scf01427g00001.1 504 QFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 547
                               *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.179158527IPR005202Transcription factor GRAS
PfamPF035142.5E-98185547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLNNSN NNNNNNLRNS SFPAATNSPN LCYEPKSVLE LRRSPSPILD  60
NKQVITNPDY STLCGGGEDP LQLGDHVLSN FEDWDSLMRE LGLQEDSASL TKSNPQLTLT  120
QTESLTQFHT LSEYSADSAP FGSSEFSFSE NYPQQFPAVN QGNYINALDL ATGDNNNWNL  180
GFDYVDELIR FAECFETNAF QLAHVILARL NQRLRSASGK PLQRAAFYFK EALQAQLAGS  240
TRQTRPSSSS DVIQTIKSYK IFSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG  300
GHWASFMKEL ADKAESRKAV TPVFRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF  360
VLIRTFELLS FKSIKFMDGE KTAVLLSPAI FRRVGSGFVS DLRRVNPNVV VHVDSEGLMG  420
YGTASFRQTV IDGLEFYSTL LESLEAANIG GGNNCGDWMR KIESFVLFPK IVELVAAIGR  480
RNGGGGSWKE AVVAAGFRPV GLSQFADFQA DCLLGRVQVR GFHVAKRQAE MLLCWHDRAL  540
VATSAWRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2519254627378Protein SCARECROW
5b3h_A2e-2519254626377Protein SCARECROW
5b3h_D2e-2519254626377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177930.0EF517793.1 Petunia integrifolia subsp. inflata BAC 126I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433149.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-145SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA9XLF50.0A9XLF5_PETIN; Uncharacterized protein
STRINGXP_009590475.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-145GRAS family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.
    Genetics, 2008. 180(1): p. 391-408
    [PMID:18723883]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]