PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01414g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20758.4 Da PI: 8.3963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 40 | 88 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+ +l+g Peinf101Scf01414g00006.1 40 YRGVRRRR-WGKWVSEIREPRK---KSRIWLGSFSSPEMAARAYDVAAYCLKG 88 9****777.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.33E-33 | 38 | 97 | No hit | No description |
PROSITE profile | PS51032 | 23.604 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 39 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 39 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-12 | 40 | 51 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 40 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-12 | 78 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEQRQPLPPC NENNISTSPV NTDCQKIDIH KGSNTRHQNY RGVRRRRWGK WVSEIREPRK 60 KSRIWLGSFS SPEMAARAYD VAAYCLKGCK AQLNFPDEIE HLPRPKTCMA RDIQAAAAIA 120 ANNANIVRKK NNEDCVCDDF WTEIELPELR DAGKECLSSE SSLNRSDYLF SHELQAYSSR 180 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 31 | 98 | 6 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019228064.1 | 8e-68 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 1e-50 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A314KP90 | 2e-66 | A0A314KP90_NICAT; Ethylene-responsive transcription factor erf023 | ||||
STRING | XP_009790153.1 | 4e-65 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 7e-40 | ERF family protein |
Publications ? help Back to Top | |||
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