PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01350g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 332aa MW: 36368.7 Da PI: 5.9846 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.2e-18 | 242 | 275 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y++ + Peinf101Scf01350g00021.1 242 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 275 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.2E-73 | 4 | 329 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.411 | 236 | 272 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.8E-17 | 236 | 286 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 240 | 299 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-15 | 240 | 273 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.35E-15 | 241 | 288 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 242 | 267 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-16 | 242 | 275 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGSNLVDENY EIDCGSFFDH IDDLIEFPLE NECGGDLTST DRKDFPSIWN DPLPDTDSIF 60 SGSHYNSASD MSTELDLSTE LSIPYEDIVQ LEWLSTFVED SFSGGGLTLG KENIPLNKEP 120 SQAKFQTSSP VSVLESSSSS SSSSCSGEKI VPLSSPCHRG PQRARTKRPR PATFNPPPVI 180 QQSFVTQGLA SESENFAESP IKKNLNPVAA SEQKKKKKIK MSFPLALIET NQNPTSQTVR 240 KCQHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SLHSNSHKKV 300 IEMRTKVVPD TTTTTVSKTA SPATAIQAEF NP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 170 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016503811.1 | 1e-174 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016503812.1 | 1e-174 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016503813.1 | 1e-174 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A1S4CRV8 | 1e-173 | A0A1S4CRV8_TOBAC; GATA transcription factor | ||||
STRING | XP_009598426.1 | 1e-172 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-39 | GATA family protein |