PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01341g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17703.9 Da PI: 4.5607 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2.1e-21 | 2 | 51 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 k+i ks qvtfskR+ g+lKKA+ELS+LCda+vavi+ s+ +k+y + Peinf101Scf01341g00001.1 2 KKIAKKSSLQVTFSKRKSGLLKKASELSTLCDAQVAVIVQSPAaNKIYSF 51 678899999*******************************9852666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.8E-20 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-23 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.684 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-22 | 3 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-7 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-7 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MKKIAKKSSL QVTFSKRKSG LLKKASELST LCDAQVAVIV QSPAANKIYS FGNPSVDSII 60 NRFQENTNNN KGEMYATLFQ ENTREKYWWD YDDQTLENMG LQEFEECMTA MQVLKKNLLK 120 RADDLANMNI DDFANLNVPS DDDPLQYFDF ESFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601728.1 | 4e-44 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016463824.1 | 4e-44 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016511813.1 | 4e-44 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3ZHH3 | 9e-43 | A0A1S3ZHH3_TOBAC; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4DEN6 | 1e-42 | A0A1S4DEN6_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009601728.1 | 2e-43 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-22 | AGAMOUS-like 62 |