PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01332g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 226aa MW: 25350.7 Da PI: 8.2039 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.8 | 7.2e-19 | 151 | 184 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTplWR+gp g+ktLCnaCG++yr+ + Peinf101Scf01332g01010.1 151 CTHCEITKTPLWREGPLGPKTLCNACGVRYRSGR 184 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.14E-15 | 143 | 207 | No hit | No description |
SMART | SM00401 | 6.2E-16 | 145 | 195 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.07 | 149 | 181 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.68E-15 | 150 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-15 | 150 | 182 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-16 | 151 | 184 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 151 | 176 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVEQNCWDGI PMGLDEDFES ILNNLEFPLE SLDEDWDDSV YQFLEPIPLD DEVFLNELSE 60 AQGTVSFQTQ SPVSVLEQSS SCFDGKSISF KSATKRRRSK RAQSSTLSPW LLMAPISCAA 120 FKSKKNSDAK KGKEKKRRNL SQLSGASVKK CTHCEITKTP LWREGPLGPK TLCNACGVRY 180 RSGRLFPEYR PASSPTFVPS LHSNSHRKVT EMRKKAPTEL EFCSSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774660.1 | 1e-102 | PREDICTED: GATA transcription factor 11-like | ||||
Refseq | XP_016486021.1 | 1e-102 | PREDICTED: GATA transcription factor 11-like | ||||
Swissprot | Q6DBP8 | 4e-43 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | A0A1S4BB31 | 1e-100 | A0A1S4BB31_TOBAC; GATA transcription factor 11-like | ||||
TrEMBL | A0A1U7WK81 | 1e-100 | A0A1U7WK81_NICSY; GATA transcription factor 11-like | ||||
STRING | XP_009774660.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3134 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 6e-39 | GATA transcription factor 11 |