PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01332g01002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 357aa    MW: 39650.3 Da    PI: 8.2033
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01332g01002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24112212198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD
  Peinf101Scf01332g01002.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfpkldfkADPPVQ--TVIAKDVHGQMWQFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGD 194
                               89*****************************95444444..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                               +vvF   + +++ l+v+++r
  Peinf101Scf01332g01002.1 195 SVVFL--RAENGDLCVGIRR 212
                               *****..4488889****98 PP
2Auxin_resp113.71.6e-37268351183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa  a+++++FevvY+Pra t+e++v++++v++a++++++ GmRfkmafetedss++++ +G++++v+ +dp++Wp+S+Wr+L+
  Peinf101Scf01332g01002.1 268 AAYLAANGQPFEVVYYPRANTPEYCVRASSVNAAMSIQWCSGMRFKMAFETEDSSRISWfMGIISSVQVADPIHWPHSPWRLLQ 351
                               677899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-38104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-30105214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-22111212No hitNo description
PfamPF023624.3E-22112212IPR003340B3 DNA binding domain
SMARTSM010192.1E-21112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816112214IPR003340B3 DNA binding domain
PfamPF065071.3E-32268351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKEVVEKCLD SQLWHACAGS MVQIPPVNSK VFYFPQGHAE HTLTNVDFTA LGKIPAMILC  60
RITAVKFLAY PETDEIYAKI RLIPVENKEG DFEDSCVLGS TVAETTEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPK LDFKADPPVQ TVIAKDVHGQ MWQFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSVVFLR AENGDLCVGI RRVKRGGIGG LESQSWWNSA SGNYGGPYAF  240
LKEGENTMMR SGSNGNKGQV SPESVVKAAY LAANGQPFEV VYYPRANTPE YCVRASSVNA  300
AMSIQWCSGM RFKMAFETED SSRISWFMGI ISSVQVADPI HWPHSPWRLL QVMQQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-73935251368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247626.10.0PREDICTED: auxin response factor 10-like
RefseqXP_019247628.10.0PREDICTED: auxin response factor 10-like
RefseqXP_019247629.10.0PREDICTED: auxin response factor 10-like
SwissprotQ653H71e-170ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1J6IP480.0A0A1J6IP48_NICAT; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-159auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]