PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01318g09013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LSD
Protein Properties Length: 162aa    MW: 16633.2 Da    PI: 8.2567
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01318g09013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.54.5e-13730124
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                              C+gCrt+L YPrGA++V+Ca+C++
  Peinf101Scf01318g09013.1  7 CSGCRTILLYPRGATNVCCAVCNA 30
                              **********************97 PP
2zf-LSD147.62.8e-154670125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggCrtlL+ PrGA+sVRCa+C+tV
  Peinf101Scf01318g09013.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70
                              ************************9 PP
3zf-LSD123.68.4e-088499116
                   zf-LSD1  1 CggCrtlLsYPrGAps 16
                              Cg+Crt+L+YP GAps
  Peinf101Scf01318g09013.1 84 CGNCRTMLMYPCGAPS 99
                              ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.9E-13432IPR005735Zinc finger, LSD1-type
PfamPF069432.8E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-174373IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-78198IPR005735Zinc finger, LSD1-type
PfamPF069435.3E-68499IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT  60
SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSA GDGRVPIPVH APNGSATSSA  120
GTSSSTATAR TQNQTVVVQN PMSLDESGKL VSNVVVGVTT TT
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783613.14e-98PREDICTED: protein LOL2-like isoform X1
RefseqXP_016510524.14e-98PREDICTED: protein LOL2-like
SwissprotQ2QMB33e-57LOL2_ORYSJ; Protein LOL2
TrEMBLA0A1S4DBD81e-96A0A1S4DBD8_TOBAC; protein LOL2-like
TrEMBLA0A1U7WYC91e-96A0A1U7WYC9_NICSY; protein LOL2-like isoform X1
STRINGXP_009783613.12e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-49lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]