PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01318g08011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 883aa    MW: 96539 Da    PI: 6.0323
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01318g08011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182785357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Peinf101Scf01318g08011.1 27 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                              6789*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-19885IPR009057Homeodomain-like
PROSITE profilePS5007115.7912286IPR001356Homeobox domain
SMARTSM003891.5E-152490IPR001356Homeobox domain
SuperFamilySSF466892.65E-162788IPR009057Homeodomain-like
CDDcd000861.22E-162787No hitNo description
PfamPF000463.8E-162785IPR001356Homeobox domain
CDDcd146862.02E-579118No hitNo description
PROSITE profilePS5084825.559165383IPR002913START domain
CDDcd088751.12E-65169402No hitNo description
SMARTSM002347.4E-43174401IPR002913START domain
PfamPF018523.4E-46175399IPR002913START domain
Gene3DG3DSA:3.30.530.208.0E-23176396IPR023393START-like domain
SuperFamilySSF559613.02E-33176403No hitNo description
PfamPF086702.8E-44733872IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MALCIHRESN SGGSSSGKNN NQMDNSKYVR YTPEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKESS RLTTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VYENGYMKQQ LHTVSSTTTD TSCESVVVSG QQQRKNPTPQ HPERDANNPA GLLAIAEETL  180
AEFLGKATGT AVDWVQMIGM KASLFAVCAS LVSELPIHPG PDSIGIVAVS RNCSGVAARA  240
CGLVSLEPTK VAEILKDRPS WYRDCRCLNV LSVIPTGNGG TIELIYLQTY APTTLASARD  300
FWTLRYTTNL EDGSLVICER SLTSATGGPS GPPATSFVRA DMLPSGYLIR PCDGGGSMIH  360
IVDHIDLDAW SVPEVLRPLY ESSKILAQKM TMAGLRHIRQ IAQETSGEIQ YTGGRQPAVL  420
RALSQRLCRG FNDAVNGFVD DGWTIMDSDG VEDITIAINS SSSKFLGSQY NSLSILPTFG  480
GVLCARASML LQNVPPALLV RFLREHRSEW ADYGVDAYSA ASLKASPYAV PCARPGGFPS  540
SQVILPLAQT VEHEEFLEVV RLEGPAFSPE DIALSRDMYL LQLCSGVDEN AAGACAQLVF  600
APIDESFGDD APLLPSGFRV IPLEPKSFST FTMQDGPAAT RTLDLASTLE AGTGGTRPAG  660
EIEANNYNHR SVLTIAFQFT FESHYRDNVA AMARQYVRSI VGSVQRVAMA IAPSRLTSQL  720
TPKPFPGSPE AVTLARWISR SYRVHTGGDL LQVDSQAGDA ILKQLWHHND AIMCCSVKMN  780
ASAVFTFANQ AGLDMLETTL LALQDIMLDK ILDEAGRKVL LSEFSKIMQQ GFAYLPAGIC  840
VSSMGRPVSY EQAVAWKVLN DEDSNHCLAF MCDVNSLFDV TLG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612341.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_016501663.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CKE40.0A0A1S4CKE4_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]