PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01317g11021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 901aa    MW: 99864.3 Da    PI: 6.5674
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01317g11021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23128228198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD
  Peinf101Scf01317g11021.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldynQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGD 210
                               99****************************98544444..48******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                               +v+F   ++++ +l+++++ 
  Peinf101Scf01317g11021.1 211 SVIFI--WNEKNQLLLGIRH 228
                               *****..8888889999986 PP
2Auxin_resp115.74.1e-38254337183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aaha+st+s F+++YnPr+s+s+Fv++++k++ka++ +++svGmRf+m fete+ss rr++Gtv+g+ dldp++WpnS+Wrs+k
  Peinf101Scf01317g11021.1 254 AAHATSTNSRFTIFYNPRSSPSDFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTVTGIGDLDPSHWPNSHWRSVK 337
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-21127220No hitNo description
PfamPF023622.6E-21128229IPR003340B3 DNA binding domain
SMARTSM010191.3E-23128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365128230IPR003340B3 DNA binding domain
PfamPF065074.7E-33254337IPR010525Auxin response factor
PfamPF023093.7E-7760852IPR033389AUX/IAA domain
SuperFamilySSF542776.02E-7761842No hitNo description
PROSITE profilePS5174523.828767851IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MRLSSAGLNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
AEAHFPSYPS LPPQLICQLH NVTMHADVET DDVYAQMTLQ PLSPEEQKES SFLPLDLGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYN QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRHAS RTQAVMPSSV  240
ISSDSMHLGL LAAAAHATST NSRFTIFYNP RSSPSDFVIP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTVTGI GDLDPSHWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLGLKRSWPP GFPALNGMKD ADMVMNPMMW LREVGHPGTQ SINFQGFGVT  420
PWMQPRIDVP IVGMQMDAYQ AMATAGLQDM RALDHAKQAL NPLLQLQQAN GVSNSTAGLL  480
YPQLFQQSQS QTAFLPSMAE GQFQVQPSQP HSFQQQMLHQ NSFNTIHQQQ HQSPQERQPP  540
VQQQQAIGQQ VANVSSVMNQ LGTSSQSTKT SLQAFCSMQQ ERFTDTHMNL STNPITNPLH  600
SLSGAVARDE PAHLVSVTRS SSLLSPTGWP PKRVAIDPVL SPVSSQCTSP QVDRLGTPTK  660
SISQNAFSLP PFPGREYPVD QEGNNDPHNH LLFGVNIDSP SLMQNGIPNL RGVGSDCEST  720
NVPFASSNYL SNTGTDFQNA VMPTSGCIDE SGFMRNSQNV GQQSPHNTFV KVYKSGSFGR  780
SLDITKFSSY HELRSELAQM FGLEGLLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS  840
VWCIKILSPQ DVQQMGKQGL ELLNSVSMSR TSNNYSCDDF ANRSETRNMT SGIMSVGTLD  900
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1542035851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627654.10.0PREDICTED: auxin response factor 6-like isoform X3
RefseqXP_016449913.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3YD380.0A0A1S3YD38_TOBAC; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
STRINGXP_009627652.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]