PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01317g10027.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 422aa    MW: 46719.6 Da    PI: 6.5933
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01317g10027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.51.2e-38682132135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               +g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ +++ + +   ++e++ss++ ++
  Peinf101Scf01317g10027.1  68 TGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGVDQPSKAVEWLLKAAAPSISELPPLEAFPDTMQlSDEKRSSAGTEP 152
                               689*************************************************************555552222333333333322 PP

                       TCP  86 ssg..........kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +          + + ++++s++s++s+ s l+l++ esr kar+ra++r  ek + k++
  Peinf101Scf01317g10027.1 153 GFDsadleidnddDPNCQQQHSSNSETSKGSGLSLSRsESRIKARERAKKRAVEKEKEKEN 213
                               22255677777753333444666667777778999999*************9999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3869210IPR005333Transcription factor, TCP
PROSITE profilePS5136931.91870128IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.956190209IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEMEEIQTQD RKFARISKKN GRMRGQMGDV LYQDEEEDVG EMKKSSLCDV ARLCGWPTSR  60
IVRVSRTTGG KDRHSKVLTS KGLRDRRVRL SVNTAIQFYD LQDRLGVDQP SKAVEWLLKA  120
AAPSISELPP LEAFPDTMQL SDEKRSSAGT EPGFDSADLE IDNDDDPNCQ QQHSSNSETS  180
KGSGLSLSRS ESRIKARERA KKRAVEKEKE KENEPSIVAH HQNMQPSSSF TELLTVGMTN  240
NNNNSNTRPN GSFHQTTPRQ WSNNPLEYFT SGLLGPSTTR GIDNSTNYSG QTHMGNHPQP  300
MFSITEDHHP ELQHFPFIGG DNLVVPVVTT GGGNNSNEYN LNFSISSASS ASSNAGYNRG  360
TLQSNSSTSP SIIPHFQRFT PIDGSQSLFL GTNNAASVYD ALIQIKKEKE RTDLVPIFIY  420
GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2175129155Putative transcription factor PCF6
5zkt_B2e-2175129155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1752391e-157KJ175239.1 Petunia x hybrida cultivar W115 transcription factor TCP6 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557428.11e-169PREDICTED: transcription factor TCP2-like
RefseqXP_016557429.11e-169PREDICTED: transcription factor TCP2-like
TrEMBLA0A0X7YPS00.0A0A0X7YPS0_PETHY; Transcription factor TCP6
STRINGXP_009591865.11e-167(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-37TCP family protein