PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01294g02073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16236.5 Da PI: 7.2581 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.4 | 4e-09 | 26 | 58 | 2 | 38 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 ++ GVr ++ +g+W AeI+d + + r +lg+f t Peinf101Scf01294g02073.1 26 KFVGVRHRP-SGKWIAEIKDTT----KdIRLWLGTFET 58 899***999.7*********43....35********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.838 | 26 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-8 | 26 | 59 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.15E-13 | 26 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-12 | 26 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0011 | 26 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MKKLTKFKGR KRSNNTSSSS SSSSNKFVGV RHRPSGKWIA EIKDTTKDIR LWLGTFETIL 60 VLVLVVFDQG LEFAQQLFDF PKNVTLDESK DDIGFTEFER MKVERQISAS LYAVNGVQEY 120 METMYDPSES LWDLSTLCSS LC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237875 | 2e-36 | AC237875.1 Solanum tuberosum cultivar RH89-039-16 clone RH168B16, complete sequence. | |||
GenBank | HG975522 | 2e-36 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757570.1 | 3e-30 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Refseq | XP_016475325.1 | 3e-30 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Refseq | XP_019264096.1 | 3e-30 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 4e-19 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A103YG11 | 3e-44 | A0A103YG11_CYNCS; AP2/ERF domain-containing protein (Fragment) | ||||
STRING | XP_009757570.1 | 1e-29 | (Nicotiana sylvestris) | ||||
STRING | OBART07G19610.1 | 2e-30 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24864 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-15 | related to AP2 11 |
Publications ? help Back to Top | |||
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