PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01271g03007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 482aa MW: 55123 Da PI: 8.2628

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01271g03007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51	2.7e-16	127	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ++ps+v +l lpk+f++ + + e++t++l de+g++++ + ++++ l++GW++F +++L gD ++F+l+ Peinf101Scf01271g03007.1 127 FIKCMLPSNVAHGFWLHLPKSFCNVYL--PSEDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLI 205 89*******************7774..34678************888888....*********************99 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + + l+v+++r Peinf101Scf01271g03007.1 206 EPCK--LKVHIVR 216 7444..5888876 PP
2	B3	30.9	5e-10	408	468	32	98
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ +tl de+g + + k+ k++ l++GW++F+ +++L +gD +vF+l++ ++f +v ++r Peinf101Scf01271g03007.1 408 RDEYITLIDENGVESDTKYLALKTG----LSGGWRGFAMDHELVDGDALVFQLIEPRKF--KVYIIR 468 445699***********666666....9*********************986666..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-19	121	216	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-22	122	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.08E-21	125	216	No hit	No description
SMART	SM01019	8.2E-17	127	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.012	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-13	127	216	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-17	383	470	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.8E-12	384	470	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.88E-17	385	468	No hit	No description
SMART	SM01019	2.2E-11	387	470	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-7	408	468	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.53	412	470	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEDRNMNSVK SVTKISTSKK VVVETNSNKQ RPTSHNSAST STHTHPSPKI KRVQLDRKNM 60 VPKKPRSVKS KPKQVKSNHP KKAESLKRKS GKRTKMNDLY DDVEAKFSVM ERAERVLSTL 120 ADEFPSFIKC MLPSNVAHGF WLHLPKSFCN VYLPSEDTTV ILVDEWGNEY KTSYLLERNG 180 LSAGWRGFSM SHRLLKGDLL IFRLIEPCKL KVHIVRVHGR DVVDAALCLM NIDALKKSAD 240 LGNFTFSTCL LVLLICFKKD NKKRKKAKHL VEPFFVEFSK PKEHVRNDSH IVVDLNVSPP 300 MDLCETNSED FDSEVLEGSE VTNRLQSNDI CCSETSFLHD HPQKSITCSY KRRDLLNRVY 360 AADEDRQFAV ERAEQLQSDI GDYFPIFVKP MLQSHVTGGF WLTYLPKRDE YITLIDENGV 420 ESDTKYLALK TGLSGGWRGF AMDHELVDGD ALVFQLIEPR KFKVYIIRVN QDEDEDEETE 480 GA

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEDRNMNSVK SVTKISTSKK VVVETNSNKQ RPTSHNSAST STHTHPSPKI KRVQLDRKNM  60
VPKKPRSVKS KPKQVKSNHP KKAESLKRKS GKRTKMNDLY DDVEAKFSVM ERAERVLSTL  120
ADEFPSFIKC MLPSNVAHGF WLHLPKSFCN VYLPSEDTTV ILVDEWGNEY KTSYLLERNG  180
LSAGWRGFSM SHRLLKGDLL IFRLIEPCKL KVHIVRVHGR DVVDAALCLM NIDALKKSAD  240
LGNFTFSTCL LVLLICFKKD NKKRKKAKHL VEPFFVEFSK PKEHVRNDSH IVVDLNVSPP  300
MDLCETNSED FDSEVLEGSE VTNRLQSNDI CCSETSFLHD HPQKSITCSY KRRDLLNRVY  360
AADEDRQFAV ERAEQLQSDI GDYFPIFVKP MLQSHVTGGF WLTYLPKRDE YITLIDENGV  420
ESDTKYLALK TGLSGGWRGF AMDHELVDGD ALVFQLIEPR KFKVYIIRVN QDEDEDEETE  480
GA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-74	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-74	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016515737.1	1e-179	PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
Swissprot	Q69V36	2e-49	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1S4DQN7	1e-178	A0A1S4DQN7_TOBAC; B3 domain-containing protein At5g42700-like isoform X2
STRING	XP_009612758.1	1e-175	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-48	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]