PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01252g01013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 242aa    MW: 28035.2 Da    PI: 6.5082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01252g01013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161460147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rg+W++eEd +l  +v+++G ++W+  +++ g+ R++k+c++rw + 
  Peinf101Scf01252g01013.1 14 RGAWSEEEDNKLRAYVERFGHPNWRQLPKYAGLMRCGKSCRLRWMNN 60
                              89******************************************997 PP
2Myb_DNA-binding57.53.1e-1867111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +g+ + eE++l++++++qlG++ W+tIa++++ gR+++++k++w+ +
  Peinf101Scf01252g01013.1  67 KGNYSHEEEQLIIKLHNQLGNR-WSTIAAKLP-GRSDNDIKNHWHAH 111
                               7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.127961IPR017930Myb domain
SuperFamilySSF466892.08E-2911108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-221568IPR009057Homeodomain-like
CDDcd001673.61E-101661No hitNo description
PROSITE profilePS5129425.66262116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2469115IPR009057Homeodomain-like
CDDcd001673.27E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRTPSIDKN GMKRGAWSEE EDNKLRAYVE RFGHPNWRQL PKYAGLMRCG KSCRLRWMNN  60
LRPGLKKGNY SHEEEQLIIK LHNQLGNRWS TIAAKLPGRS DNDIKNHWHA HLKKRAKTNA  120
NSSTMEQMST ESSQSGCQTE QSNSKLPELE NYCDPIDTSS PPEVSSSDLS KLFSSCSLLN  180
GMDWIEDDQI RSMEQLSNID SVEPLLDSFS CWTKPIDNFQ TEHSFDNFWS EHFDNFWTQP  240
FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121185110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRAKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267259.11e-109PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX84e-52MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A314KYX71e-108A0A314KYX7_NICAT; Myb-related protein myb4
STRINGXP_009766826.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-53myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]