PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01234g06003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 654aa MW: 73926.1 Da PI: 6.3575

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01234g06003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	360.9	1.9e-110	283	649	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lL++cAea +s +++ ++L+++++++sp gd ++Rla +f++AL+ar ++ ++++ ++++ s+ l+a++++ ++ Peinf101Scf01234g06003.1 283 LLTRCAEAAASYNNKTFVEVLKKIRQHSSPFGDGNERLAYCFANALEARFSGGETNTF--SNCKKI---LASDFLKAYQVYITAC 362 89************************************************333333..244444...488********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 P+ ++s++ aN+ I + ++++++vHiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++ ++ Peinf101Scf01234g06003.1 363 PFKRMSNIFANKSIAKLTSEATKVHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLENYSKR 447 ************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 ++vpfe+++ +akr+++++++eL+++++E ++Vn+ ++l++++de+vs +++rd+vL+l+k+++P+ +v+ +a +n++ F +r Peinf101Scf01234g06003.1 448 FNVPFEYKA-IAKRWDAITVKELNIEKDEIVVVNCLYRLKNIPDETVSDKNPRDAVLNLIKQINPRYFVHGVINAMYNASFFTTR 531 *****.7********************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGFk +pl+++++k++k+ + Peinf101Scf01234g06003.1 532 FREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKQWQVRNQIAGFKRLPLDQDIVKEVKAKV 616 ********************************************************************************* PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + + v+e+s+++++gWk+r ++++S+W+ Peinf101Scf01234g06003.1 617 KMAYHRDFLVDEDSNWMLQGWKGRIMYALSVWE 649 999***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.997	254	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-108	283	649	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MMNNNTLFSL GDHNSCGGFE FGHHFLSAST ALSSNLGSGF SDEVVDGESR VVESDYFDGV 60 FKYIQQMLME EDDLESRPGM FQDCMALQAA EKSFYDALTQ KNDFINHDCN AMTQFVESNF 120 ITTSDLGCPQ ESLFCYPWDG ALSDILLNPP LNNTSSNNHK AAANGGDAVA PATNQGGNSS 180 SKRSSEGKKN HNGEDGDQYS SEGRNPKQFA STYVAEPEHT EGYDKALLCP AMSPSFYEES 240 SDSENVAWNK QKSCHLKESK RGRPRGSKKG ANTTNEVVDL TCLLTRCAEA AASYNNKTFV 300 EVLKKIRQHS SPFGDGNERL AYCFANALEA RFSGGETNTF SNCKKILASD FLKAYQVYIT 360 ACPFKRMSNI FANKSIAKLT SEATKVHIID FGILYGFQWP CLIHGISLRP GGPPKLRITG 420 IDFPQPGFRP AERVEETGRR LENYSKRFNV PFEYKAIAKR WDAITVKELN IEKDEIVVVN 480 CLYRLKNIPD ETVSDKNPRD AVLNLIKQIN PRYFVHGVIN AMYNASFFTT RFREALFHFS 540 SQFDMFEATM AREDEGRRMF EQEIFGRDIM NVIACEGTER VERPESYKQW QVRNQIAGFK 600 RLPLDQDIVK EVKAKVKMAY HRDFLVDEDS NWMLQGWKGR IMYALSVWEP VHRS

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MMNNNTLFSL GDHNSCGGFE FGHHFLSAST ALSSNLGSGF SDEVVDGESR VVESDYFDGV  60
FKYIQQMLME EDDLESRPGM FQDCMALQAA EKSFYDALTQ KNDFINHDCN AMTQFVESNF  120
ITTSDLGCPQ ESLFCYPWDG ALSDILLNPP LNNTSSNNHK AAANGGDAVA PATNQGGNSS  180
SKRSSEGKKN HNGEDGDQYS SEGRNPKQFA STYVAEPEHT EGYDKALLCP AMSPSFYEES  240
SDSENVAWNK QKSCHLKESK RGRPRGSKKG ANTTNEVVDL TCLLTRCAEA AASYNNKTFV  300
EVLKKIRQHS SPFGDGNERL AYCFANALEA RFSGGETNTF SNCKKILASD FLKAYQVYIT  360
ACPFKRMSNI FANKSIAKLT SEATKVHIID FGILYGFQWP CLIHGISLRP GGPPKLRITG  420
IDFPQPGFRP AERVEETGRR LENYSKRFNV PFEYKAIAKR WDAITVKELN IEKDEIVVVN  480
CLYRLKNIPD ETVSDKNPRD AVLNLIKQIN PRYFVHGVIN AMYNASFFTT RFREALFHFS  540
SQFDMFEATM AREDEGRRMF EQEIFGRDIM NVIACEGTER VERPESYKQW QVRNQIAGFK  600
RLPLDQDIVK EVKAKVKMAY HRDFLVDEDS NWMLQGWKGR IMYALSVWEP VHRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-47	286	650	24	379	Protein SCARECROW
5b3h_D	1e-47	286	650	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798121.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1U7Y860	0.0	A0A1U7Y860_NICSY; scarecrow-like protein 30
STRING	XP_009798121.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-164	SCARECROW-like 14