PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01208g05010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 76300 Da PI: 7.0038 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 111 | 211 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD Peinf101Scf01208g05010.1 111 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 193 99**************************999543..445568******************************************* PP EEEEEE-SSSEE..EEEEE- CS B3 79 fvvFkldgrsefelvvkvfr 98 +vF + +++el+v+v+r Peinf101Scf01208g05010.1 194 AFVFL--RGDNGELRVGVRR 211 *****..3489999****98 PP | |||||||
2 | Auxin_resp | 101.1 | 1.4e-33 | 237 | 316 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg d+++ +W++SkWrsLk Peinf101Scf01208g05010.1 237 ASHAITTQTRFVVYYKPRT--SQFIIGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGAGDISS-QWSESKWRSLK 316 789***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-40 | 101 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-39 | 103 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.98E-20 | 110 | 211 | No hit | No description |
Pfam | PF02362 | 4.3E-21 | 111 | 211 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 111 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-31 | 237 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.5E-6 | 558 | 606 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.76E-13 | 567 | 646 | No hit | No description |
PROSITE profile | PS51745 | 26.938 | 570 | 662 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.3E-7 | 616 | 660 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MGSDDLYTEL WKACAGPLVD VPRAGERAYY FPQGHIEQLE ASTNQALNQQ IPQFNLPSKI 60 LCRVVHVQLL AETETDEVYA QITLHPEAEQ EEPSSPDPCL PDQPKQSVQS FCKILTASDT 120 STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW 180 STFVTSKRLV AGDAFVFLRG DNGELRVGVR RLARQQSAMP QSVISSQSMH LGVLATASHA 240 ITTQTRFVVY YKPRTSQFII GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGA 300 GDISSQWSES KWRSLKIQWD EPASILRPDR VSPWEIEPFV APTSVDVAQP GIKSKRPRPL 360 ELPHTETAAA SAASSFWYPG SGPTLKVSHL GSVAEVQSHD NQLFWSSKQN SSLSNSMSNI 420 SCRTHLSGAW QHNMLANGSV NLFRDSIEDN KQLTARSAIL DYGSPMSSRA SNGLLLEQVV 480 RGNKREISSA CRLFGIDLRT NSNNATTREK EMLGPNVTSN CTNNAPTGPD SSEVDKDRSV 540 EHLNPSEEKK QVQLEALAKD THRQGLTSSR TRTKVQMQGV RVGRAVDLTA LSGYNDLISE 600 LEKIFDIKGE LCPRNKWEVV YTDDEGDMML VGDDPWPEFC KMVRRIFIYS SEEVKKMSPR 660 CKLPILSLEG EGTMPSVDSG LKSEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-173 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-173 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 354 | 358 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233120 | 1e-117 | AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence. | |||
GenBank | HG975440 | 1e-117 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-117 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339723.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0V0ISA1 | 0.0 | A0A0V0ISA1_SOLCH; Auxin response factor | ||||
STRING | PGSC0003DMT400000345 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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