PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01201g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 15937 Da PI: 8.8655 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.3 | 3e-16 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ++ r vtfskRr+g++KK +EL +++a va ++fs+tgk y+ Peinf101Scf01201g00004.1 12 QIVKETSRMVTFSKRRKGLFKKSSELESMTGAHVAAVVFSPTGKPYTH 59 6778999*************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-19 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.549 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-20 | 4 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-21 | 13 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MGTGKKKIEI KQIVKETSRM VTFSKRRKGL FKKSSELESM TGAHVAAVVF SPTGKPYTHG 60 NVSSAIERHF SSSTSENDVC SDSSGSRSSM HSANCLYKWL EDIKVDECQN LNQLLLLKEQ 120 LEGTKENLAS NIQDSQTFEA LFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796162.1 | 1e-55 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_016514484.1 | 4e-55 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_019266521.1 | 1e-55 | PREDICTED: MADS-box transcription factor 23-like | ||||
TrEMBL | A0A1S4DMV2 | 1e-53 | A0A1S4DMV2_TOBAC; MADS-box transcription factor 23-like | ||||
TrEMBL | A0A1U7XVX1 | 2e-54 | A0A1U7XVX1_NICSY; MADS-box transcription factor 23-like | ||||
TrEMBL | A0A314L0I9 | 3e-54 | A0A314L0I9_NICAT; Uncharacterized protein | ||||
STRING | XP_009796162.1 | 4e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-14 | AGAMOUS-like 29 |