PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01199g04008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28848.6 Da PI: 4.2754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.3 | 1.3e-11 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l+d++k++G g+W+t ++ g Peinf101Scf01199g04008.1 14 KGPWTPEEDQKLIDYIKEHGYGNWRTLPKNAG 45 79*************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.86E-9 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.394 | 9 | 55 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.3E-9 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-7 | 16 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIK EHGYGNWRTL PKNAGHVQPL VNPEVLRLAT 60 SLLSSQRQNS NFLMPNNVQE NQICISQVQN QVHPMVQVTS QVQNPIQNIP TCTTLSTTPS 120 VPFYDDARLM EQFSSNLVNS SSQNCQVNEW QSSGMASNLT DQDYFNNPLQ NYGYYHELDQ 180 SIRDPPLSDA STFQSNDSNN FSFQSVLSNL STPSSSPTPL NSNSTTTEDE RDNSYCSNML 240 NFDNIPNIWD STNEFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-51 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229348.1 | 1e-106 | PREDICTED: protein ODORANT1 | ||||
TrEMBL | A0A314KLT6 | 1e-105 | A0A314KLT6_NICAT; Transcription factor myb39 | ||||
STRING | XP_009801248.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 9e-25 | MYB-like 102 |