PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01195g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 385aa MW: 42168.7 Da PI: 9.239 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 2.9e-25 | 146 | 189 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk +e Peinf101Scf01195g04004.1 146 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKLVE 189 79***************************************987 PP | |||||||
2 | QLQ | 51.1 | 4e-18 | 74 | 109 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ aQ+q+L+ Q+l+y++++a++PvPpeLl ++ Peinf101Scf01195g04004.1 74 SYFSLAQWQELELQALIYRHMIAGAPVPPELLHLVK 109 79*****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-9 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.6E-13 | 75 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.866 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.604 | 146 | 190 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.6E-21 | 147 | 189 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006995 | Biological Process | cellular response to nitrogen starvation | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0051365 | Biological Process | cellular response to potassium ion starvation | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEKQWRNQHE SEDREPTHSA KLPKLVLDLD SAASGFSTSD TSALPLFVSE PTKYSVSSDS 60 TTTTTATKFP KMGSYFSLAQ WQELELQALI YRHMIAGAPV PPELLHLVKK SLINSSPYYF 120 PQSFQQYNHY QQALLQSEYW GRTSMDPEPG RCRRTDGKKW RCSRDVVSGH KYCERHVHRG 180 RNRSRKLVEI PTTAIPPGGN VTASSGGSGV FKVNTTMASH ASAPPHFALS GTSPNSIDQL 240 HLNQRPSDST FEKKGPLEAQ NDISGDGKSS GQILRHFFDD WPRQHQESIN ARSNASSMAS 300 ATTLSISMPG NPSSDFSLKL STGDRHNSGS QPSNVDRSTW GTNQVASMGG PLAEALRSSA 360 TNSSPTSVLH QLPRGSTLEA SYVST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-58 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-58 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245144.1 | 0.0 | PREDICTED: growth-regulating factor 3-like isoform X1 | ||||
Swissprot | Q9SJR5 | 1e-86 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A1J6JAH1 | 0.0 | A0A1J6JAH1_NICAT; Growth-regulating factor 3 | ||||
STRING | XP_009783589.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 1e-66 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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