PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01186g05022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TALE
Protein Properties Length: 332aa    MW: 37275.5 Da    PI: 4.7577
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01186g05022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.9e-092622942355
                               SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               +yp++ee+ +L++ +gL+ +q+ +WF N+R ++
  Peinf101Scf01186g05022.1 262 PYPTEEEKNRLSEITGLDPKQINNWFINQRKRH 294
                               8*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-1959103IPR005540KNOX1
PfamPF037903.1E-1961102IPR005540KNOX1
SMARTSM012561.9E-25110161IPR005541KNOX2
PfamPF037913.5E-25113160IPR005541KNOX2
PROSITE profilePS5121310.685214234IPR005539ELK domain
PfamPF037895.2E-10214235IPR005539ELK domain
SMARTSM011888.8E-7214235IPR005539ELK domain
PROSITE profilePS5007112.584234297IPR001356Homeobox domain
SMARTSM003893.6E-13236301IPR001356Homeobox domain
SuperFamilySSF466892.4E-19236307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26239300IPR009057Homeodomain-like
CDDcd000861.43E-12246298No hitNo description
PfamPF059204.5E-16254293IPR008422Homeobox KN domain
PROSITE patternPS000270272295IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDELSKLHSA IACSSNNNNV VGVLENIIRQ QEGPVNNSDN NNNNLEAVHQ AEKALEMSDL  60
IKAQIANHPL YPNLVSAYLQ CRKVGAPHEM ASILEEISKE NHQLISSCHS SIEIGTDPEL  120
DEFMESYCAV LLKYKEELSK PFDEATTFLN NIESQLTNLC KENLITSTTT SSFNSNNYLS  180
GDEAGGTSDE DICCGEMEAT DGQESPANRE GENELKEMLM RKYSGYLSSL RKDFLKKRKK  240
GKLPKDARTA LLDWWNTHYR WPYPTEEEKN RLSEITGLDP KQINNWFINQ RKRHWRPSED  300
MKYALMEGVS GSNINAGSMY FDGAGGTGSI GT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229238LRKDFLKKRK
2235239KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095420.0GQ409542.1 Petunia x hybrida HERMIT-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312933.10.0homeobox protein knotted-1-like 1
RefseqXP_016499152.10.0PREDICTED: homeobox protein knotted-1-like 1
RefseqXP_016499153.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-105KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLE2CZB50.0E2CZB5_PETHY; HERMIT-like protein 3
STRINGXP_009596945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.12e-77KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]