PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01178g02028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 26158.2 Da PI: 4.9093 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.8e-10 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd++l ++++++G g+W++ ++ Peinf101Scf01178g02028.1 14 KGPWTPEEDQKLTNYINKHGHGSWRALPKLA 44 79***********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.889 | 9 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.53E-9 | 11 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-8 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-6 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDQKLTNYIN KHGHGSWRAL PKLAEVAKLN YLQNFLQPHN 60 TSFSAIQDIE AYNLLNSLSS FKDSLVLGTN NHLQIPAIST SSSLQAIQDS IPFSHLPELQ 120 TPCSNFKTSL NKDSVRPQNT EFNNVMSHGE TSPTSPWLTS SLSPSPPPPP VINDETKNEN 180 SLEVMISSCL PEERKLSDHL FQPNNERSLS NEGAPPSVWP DLLLEDSFFQ DIVKF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016494001.1 | 1e-82 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A1S4BYM2 | 3e-81 | A0A1S4BYM2_TOBAC; myb-related protein 330-like | ||||
STRING | XP_009606781.1 | 1e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-25 | myb domain protein 93 |