PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01175g08016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 581aa    MW: 64696.3 Da    PI: 7.0655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01175g08016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.77.7e-1302115801373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+a+++++l   ++l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++
  Peinf101Scf01175g08016.1 211 LKQLLIACARALAENKLDDFEKLIAKTRGAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GKDLLSYMHILY 292
                               689******************************************************************9...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P+lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l  +g+rLa +
  Peinf101Scf01175g08016.1 293 EICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLALVGKRLAAI 377
                               *****************************************************************999999************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                +++++++ef++ v     +++ e+L+v++gEalaVn+ l lh+++desv+++++rde+L+++kslsPkvv++veqe+++n+++F
  Peinf101Scf01175g08016.1 378 SQKFNIQVEFHA-VPVYAPEVTREMLDVRSGEALAVNFPLVLHHTPDESVDVTNPRDELLRMIKSLSPKVVTLVEQESNTNTAPF 461
                               ************.688999****************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rfleal+yysa+f+s++++l r+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW+ r+ +aGF+++pls+++++ +k
  Peinf101Scf01175g08016.1 462 FPRFLEALDYYSAMFESIDVTLERDRKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKLRFAMAGFRQYPLSSYVNSVIK 546
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               +llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  Peinf101Scf01175g08016.1 547 SLLRCYS-EHYTLVEKDGAMLLGWKERNLISASAW 580
                               ***9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.312185562IPR005202Transcription factor GRAS
PfamPF035142.7E-127211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDSHHLYGYG VTGANLSYSY TKTTTPSLPN RLLGTLKFDT RNSPKSPFAN YFDPDTPTTL  60
SDSLEQHSST ENISSTSPSS NSSLDHNHYF HRPSPSPDFR PDGLLVCSGG SSLLQNANHN  120
HNMKHALLQL ETALMGPEEE AATSSPSVGE IKQSQTSGQM SSMWNQESQV SRRIEPSQVS  180
VFGIAGSRIQ SEKRHKATED FSMHGIPSGN LKQLLIACAR ALAENKLDDF EKLIAKTRGA  240
VSITGDPIQR LGAYIVEGLV ARKEASGTNI YRALRCKEPA GKDLLSYMHI LYEICPYLKF  300
GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWMTLLQALA ARPSGAPYVR ITGIDDPVSK  360
YARGDGLALV GKRLAAISQK FNIQVEFHAV PVYAPEVTRE MLDVRSGEAL AVNFPLVLHH  420
TPDESVDVTN PRDELLRMIK SLSPKVVTLV EQESNTNTAP FFPRFLEALD YYSAMFESID  480
VTLERDRKER INVEQHCLAR DIVNVIACEG KERVERHELL GKWKLRFAMA GFRQYPLSSY  540
VNSVIKSLLR CYSEHYTLVE KDGAMLLGWK ERNLISASAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-632085811375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788119.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_009788120.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016475625.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S4AG000.0A0A1S4AG00_TOBAC; scarecrow-like protein 21
TrEMBLA0A1U7XNQ00.0A0A1U7XNQ0_NICSY; scarecrow-like protein 21
STRINGXP_009788119.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]