PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01175g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 38827.6 Da PI: 8.5491 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.4e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Peinf101Scf01175g02010.1 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 99 79****************************.88***************988899******************************* PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+vl++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Peinf101Scf01175g02010.1 100 TGTDKPVLTAgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 ********9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-65 | 10 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.105 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MESTDSSTGS HQQPQLPPGF RFHPTDEELV VHYLKKKAAS IPLPVAIIAE VDLYKFDPWE 60 LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLADNKTNN KPPGCDVANK KSLRLDDWVL CRIYKKHNTQ 180 RPIDHERDDL NDMMGSSIPP CNLPNTMSMS PFGHQPKIPG LKSCNYGTLL ESDHQNLYDG 240 MISNTSDSVN KGSISQFSSK RPLAGLYWND QEATANDNSQ STKRFLGENM DDGLNMNVRT 300 DEQNGSIASL LSQLPQTPSI HQQQVLGSIN DGVFRQPYQV SGMNWYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-74 | 13 | 179 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-74 | 13 | 179 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-74 | 13 | 179 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-74 | 13 | 179 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-74 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-74 | 13 | 179 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-74 | 13 | 179 | 14 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581260.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-117 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | M1BP48 | 0.0 | M1BP48_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049664 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-119 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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