PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01169g02011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 607aa    MW: 67366.6 Da    PI: 8.7625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01169g02011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08284326346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +WT+eE ++l d++k++  + +  Ia +++ +Rt +++k+r+++
  Peinf101Scf01169g02011.1 284 SWTKEETDQLFDLCKRFDLR-FVIIADRFPSNRTVEELKDRYYS 326
                               7*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1520.102.5E-884141IPR001683Phox homologous domain
SuperFamilySSF642681.07E-784141IPR001683Phox homologous domain
PfamPF162826.8E-31257331IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466893.02E-7276331IPR009057Homeodomain-like
SMARTSM007171.0E-9281330IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-6282328IPR009057Homeodomain-like
CDDcd116587.13E-19285327No hitNo description
PfamPF054994.9E-6474537IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
GO:0035091Molecular Functionphosphatidylinositol binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MESLVLNNTD SSNDSHPLSS SSLPFAKIPT EQSQSSNSTS NDILEPPSYA EAIFKSFDVD  60
HVPYEINSHD HSITSSSSSS PSSSSEFLRV TVSDPIKEQE MSNSLVPGGT TYVTYVITTR  120
TNLLDFDGTD FSVRRRFRDV VTTVSIIPNP NSPKMDAKDI LGLPKNGPTI PQEKKSRPQK  180
ESQRKPDGIS REVYALTGGI APLMPTLDIN QLKRRAQSES EKITWQWLPF TSSARKDNLQ  240
LYHWVRVVNG VPPAGDYSFA KFNKSVDVLE YTNEEYEKYL SNPSWTKEET DQLFDLCKRF  300
DLRFVIIADR FPSNRTVEEL KDRYYSVSRA ITVARAASPA DVAGHPLVKE PYNASQETER  360
KRALNMVLSQ TKLQERRDAE VLAEAKRISE SRRAAKAAEA AAEMELPVVS DAGAEGAEKA  420
IGIDAISTSP NAQLTTGIAA PPVSETATTL ASLRMLRVYL RTYALEQMVQ AASSSAGLRT  480
IKRVEQTLQD LGVNLKPKVP TKLVCAEHLE LRKEILTLLN LQKQLQYKEA EGSSYREASY  540
TETPETPPKR AQRATDLDRT FIPDSTSFGG DRAGKRDQKR KGPGRLSEVP SSPAQSKRPR  600
KLKTSDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A1e-22256341493DNA methyltransferase 1-associated protein 1
4iej_A1e-22256341493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135620.0BT013562.1 Lycopersicon esculentum clone 132299F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349165.10.0PREDICTED: SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLM1AI920.0M1AI92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000233830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76261515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]