PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01168g03019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 34980 Da PI: 6.2942 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 161 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ ++++ H+++ H Peinf101Scf01168g03019.1 161 FYCELCNKQYKLAMEFEAHLSSydH 185 79*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 1.8E-18 | 64 | 109 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.785 | 66 | 111 | IPR000467 | G-patch domain |
Pfam | PF01585 | 4.9E-16 | 67 | 107 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 4.76E-5 | 159 | 192 | No hit | No description |
Pfam | PF12171 | 8.4E-6 | 161 | 188 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDDRWFNGQP DMHTRDKRQQ EMEEADRTSV LEDLAEDFRL PINHRPTENV DLENVEQASL 60 DTRLPSSNIG FRLLQKMGWK GKGLGKNEQG ITEPIKSGIR DPKLGIGKQE EDDYFTAEEN 120 IQRRKLDIEL EETEELAKKR EVLAEREQKI ETEVKEIRKT FYCELCNKQY KLAMEFEAHL 180 SSYDHNHRKR FKEMREMHGS SRDDRQKREQ QRQEREMAKF AQMAANKKQQ EQQTPEESAN 240 IPAPSVVRTA TPLADQDQRK TLKFGFSAKG SSSKVKTLVN NSAKKQKATV ASVFSNDSDD 300 E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240222 | 2e-68 | AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence. | |||
GenBank | HG975440 | 2e-68 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 2e-68 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230362.1 | 0.0 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A3Q7EPG3 | 0.0 | A0A3Q7EPG3_SOLLC; Uncharacterized protein | ||||
STRING | XP_009757219.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8604 | 14 | 15 |