PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01166g04034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 183aa MW: 20563.4 Da PI: 8.7469 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.3 | 1.1e-22 | 97 | 140 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 +aep+rCrRtDGKkWRCs+ v++++k+CE+H+hrgr+ +rk+++ Peinf101Scf01166g04034.1 97 EAEPRRCRRTDGKKWRCSKGVVQNHKYCEKHMHRGRHHTRKHVK 140 58****************************************97 PP | |||||||
2 | QLQ | 44.9 | 3.6e-16 | 36 | 70 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Q q+L++Q+ +yKy+ a++PvP++L+ +i+k Peinf101Scf01166g04034.1 36 FTFLQRQELEQQLFIYKYIEAGLPVPSHLIIPICK 70 9999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.5E-4 | 34 | 70 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.489 | 35 | 70 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-11 | 36 | 69 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.422 | 97 | 141 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-17 | 98 | 139 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
SNGDGLLELG LNLELSQHGG NHECCYSKFS TSEYGFTFLQ RQELEQQLFI YKYIEAGLPV 60 PSHLIIPICK SIVCSIKGLH DTIGYGSLCL DFKSGTEAEP RRCRRTDGKK WRCSKGVVQN 120 HKYCEKHMHR GRHHTRKHVK PASSNMQLSS STSKSISTTI ELARVHQNSE LDATSFSIAL 180 PIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009586881.1 | 3e-74 | PREDICTED: growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 5e-42 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2G3AE89 | 3e-73 | A0A2G3AE89_CAPAN; Growth-regulating factor 10 | ||||
STRING | XP_009586881.1 | 1e-73 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14471 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-27 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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