PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01166g02015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 142aa    MW: 16878.1 Da    PI: 6.4159
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01166g02015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-1317981099
                              HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                               +k+g l +p + + ++  g++++e+  l+    + ++W vkl  +       +++GW++F+++++L+  D++vF+++g ++f   v
  Peinf101Scf01166g02015.1 17 GFKHG-LKIPTSDL-KYleGYDQHEHAVLRRAGNKEKEWPVKL--NSW----RFEEGWEKFAEEHDLQLEDVLVFRHEGYMKF--EV 93
                              45555.99*****9.676988877776666666888*******..333....499*********************9999999..99 PP

                              EEE-S CS
                        B3 95 kvfrk 99
                              ++f++
  Peinf101Scf01166g02015.1 94 SIFDS 98
                              99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-17499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-19499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616799IPR003340B3 DNA binding domain
CDDcd100171.97E-15897No hitNo description
SMARTSM010193.1E-131099IPR003340B3 DNA binding domain
PfamPF023621.1E-91898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKVPPEKPHF FKPIVPGFKH GLKIPTSDLK YLEGYDQHEH AVLRRAGNKE KEWPVKLNSW  60
RFEEGWEKFA EEHDLQLEDV LVFRHEGYMK FEVSIFDSNT HCNRKYPENQ QQEAAHITVE  120
ETNLFHACAL IQFYTTNCFN VQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801917.13e-48PREDICTED: B3 domain-containing protein REM10-like isoform X3
TrEMBLA0A1U7YCS56e-47A0A1U7YCS5_NICSY; B3 domain-containing protein REM10-like isoform X3
TrEMBLA0A2G3AW041e-47A0A2G3AW04_CAPCH; Uncharacterized protein
STRINGSolyc08g006240.1.12e-46(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-21B3 family protein