PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01161g03019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family CPP
Protein Properties Length: 797aa    MW: 87037.4 Da    PI: 5.7343
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01161g03019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.1e-16509547240
                       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                               ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Peinf101Scf01161g03019.1 509 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 547
                               689**********************************96 PP
2TCR51.12.7e-16594632139
                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                               ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Peinf101Scf01161g03019.1 594 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 632
                               589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17508549IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.877509634IPR005172CRC domain
PfamPF036389.9E-12511546IPR005172CRC domain
SMARTSM011147.5E-18594635IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.8E-12596632IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MSNNTEEQIE RENVEKKSEV ITKFEVVMDT PERNKTQIAT PLSKFEESPV FNFLNNLSPI  60
KLDKSMHFHQ TLNSLSFASI PSVFTSPHVS SIRESRFLRR HLLSDPSKPE FASDSGVKVD  120
ADEGMLDAVN NSNEPKESFG SGISVVEAPA SPSHECSKLT VELARNLNYE CSSPSTLPTG  180
GIGSRSLSEF AGSSVTYLPL VQEMSGKGLL RCDMNMDRIK EIDPNKEASG CDWESLISDA  240
TDLLIFDSPG DPEAFTKATG PNFRPLEFVS NEMQNMQNMS QVSTSEYGGD GSETEKPSTQ  300
PGEESQLMDY AETQNMKPDA SLTNDGMGGG QSEKNDNEMV STLYRGMRRR CLVFEMGGTR  360
RKHMNEVSGS SAVQEADGNL ASSEKQLVTS KTVNESSRCI LPGIGLHLNA LAASSKDGKV  420
VKHEANASGK QLLITSCSAV NFHPLVTGQE SLSKSLPETS REGEIVPFDN SIPLMEDVCQ  480
APGYVNNEEL NQTSPKKKRR RLEPGEGESC KRCNCKKSKC LKLYCECFAA GVYCVEPCAC  540
QDCFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRTTDSLS ETVDDSSKTP ASARHKRGCN  600
CKKSGCLKKY CECYQGGVGC SINCRCEGCK NAFGRKDGTD GDAEEEGTDA YEKSIVDRTS  660
HKNLVQSDVE QNPDSATPAT PLSFGRPPMQ IPFSLKNKPP RSSFLSIGSS SGLYAGQGIG  720
RPNFFQPHPK FESIQEDEMP EILQETSSPI SGIKTASPNR KRVSPPHGDF GNSPSRRSSR  780
KLILQSIPSF PSLTPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1851363114120Protein lin-54 homolog
5fd3_B6e-1851363114120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494501PKKKRRRL
2495500KKKRRR
3497501KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770245.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A1U7W7L20.0A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-143TESMIN/TSO1-like CXC 2