PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01077g15028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 253aa MW: 28973.1 Da PI: 9.38 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.4e-18 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Lee F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k Peinf101Scf01077g15028.1 89 RKKLRLTIEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 143 6778899**********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-17 | 78 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 83 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-15 | 87 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.6E-15 | 89 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.57E-13 | 89 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-8 | 145 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.3E-13 | 145 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGNDNDACDT RLTLGLGLAS TDLIPKRNQE EEKNVICLDL SIPLHADHGT KTEGFSSKTC 60 ENDEKQDTKG TISLRNFNYK IDNKKNGMRK KLRLTIEQST LLEESFKRHT TLAMGQKQEL 120 AAKLKLKPRQ VEVWFQNRRA RTKLKQTEVD CEMLKKWCQS LNNENNRLKK ALQELRSSFK 180 IDQWPITPFH LQLPKPRTIA LCPSCQKISR SGTNDHIERA AVLIENINSE QKQCDAMCTG 240 ANSDNIFIKE SNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630679.1 | 1e-105 | PREDICTED: homeobox-leucine zipper protein HAT9-like | ||||
TrEMBL | A0A1U7VN60 | 1e-103 | A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_009630679.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-41 | homeobox from Arabidopsis thaliana |