PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01064g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 145aa MW: 16239.6 Da PI: 4.1332 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 14 | 42 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+W +eEde+l+ v+ lG ++W++ a+ Peinf101Scf01064g01019.1 14 KGSWHEEEDERLASIVAILGERRWDALAK 42 799**********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-8 | 8 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.992 | 9 | 54 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.02E-5 | 11 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-6 | 14 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.94E-4 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MAFQLIMQEE ELRKGSWHEE EDERLASIVA ILGERRWDAL AKASECCGSN TSKSGQISSA 60 SKSDSINAPN NSTGDSISGK DDCSSADSNE TGLSDWIPSW SYEQSQMEHH MYLCRLNLCF 120 CHPQCFSEDN NISTWDDTSS SIWEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444726.1 | 5e-35 | PREDICTED: transcription factor MYB48-like | ||||
TrEMBL | A0A1S3XXP8 | 1e-33 | A0A1S3XXP8_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009625011.1 | 5e-35 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-10 | myb domain protein 27 |