PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01063g02003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family BBR-BPC
Protein Properties Length: 284aa    MW: 31427.2 Da    PI: 8.2076
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01063g02003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind308.22.9e-94128429301
                 GAGA_bind  29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksid 109
                               m+++aerda+irern+al e+k a+aerdma lqrd+alaern a+ erd++++al l++ s++      +++g ++ +g+k++ 
  Peinf101Scf01063g02003.1   1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNSAIQERDDAIAALRLQDSSINdnsmVPDSPGNGTENGAKHVY 85 
                               899*****************************************************99998887764444556778888888888 PP

                 GAGA_bind 110 slqqlse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesader.. 186
                               + qq  +     +ed+a++  +   +++ +  +++  +ke+k++k+ + ++  k   ++   ++  ++++++ + ++  +d +  
  Peinf101Scf01063g02003.1  86 NQQQFADvghGSMEDPAAGYLKGTDTSEAKNPKKVRRSKESKQSKQAKIPRLSKIGAESlnmQVISTTSDDWVNLQEMDSD-Keg 169
                               777744444488888888855544444444455555555555555555555444443333223333333333333322222.133 PP

                 GAGA_bind 187 .skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLe 270
                                 ++++k  +l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL+
  Peinf101Scf01063g02003.1 170 dPHTSWK-DNLGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLN 253
                               3555665.58*************************************************************************** PP

                 GAGA_bind 271 kLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               +Laa+Gydls p+DLkdhWAkHGtn++ t++
  Peinf101Scf01063g02003.1 254 RLAAQGYDLSVPLDLKDHWAKHGTNRYSTLK 284
                               ***************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.3E-951284IPR010409GAGA-binding transcriptional activator
PfamPF062175.4E-831284IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNSAIQERD DAIAALRLQD  60
SSINDNSMVP DSPGNGTENG AKHVYNQQQF ADVGHGSMED PAAGYLKGTD TSEAKNPKKV  120
RRSKESKQSK QAKIPRLSKI GAESLNMQVI STTSDDWVNL QEMDSDKEGD PHTSWKDNLG  180
LNQINFDESA MPVPVCSCTG TPQPCYKWGH GGWQSACCTT TISMYPLPQI SNKRYSRVGG  240
RKMSGGAFSK LLNRLAAQGY DLSVPLDLKD HWAKHGTNRY STLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823010.0FJ982301.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312785.10.0barley B recombinant-like protein D
RefseqXP_009789611.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_016560524.10.0PREDICTED: barley B recombinant-like protein D
TrEMBLA0A1U7XIZ50.0A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBLA0A1U8FXT20.0A0A1U8FXT2_CAPAN; barley B recombinant-like protein D
TrEMBLH1ZN840.0H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRINGXP_009789611.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80622230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-83basic pentacysteine 6