PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01057g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 689aa MW: 75291.8 Da PI: 5.6197 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.8 | 2.4e-05 | 25 | 50 | 18 | 43 |
HHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterq 43 +F++n++p+++ +eeLAkklg+ ++q Peinf101Scf01057g01003.1 25 AFKENPHPDKKIIEELAKKLGMGTKQ 50 7*********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-4 | 24 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.24E-4 | 24 | 50 | No hit | No description |
PROSITE profile | PS50848 | 18.061 | 193 | 400 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.21E-18 | 194 | 396 | No hit | No description |
CDD | cd08875 | 3.03E-75 | 197 | 396 | No hit | No description |
SMART | SM00234 | 1.4E-12 | 202 | 397 | IPR002913 | START domain |
Pfam | PF01852 | 3.1E-6 | 203 | 299 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-18 | 333 | 394 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-6 | 463 | 683 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MSEKGESSND VVSGRLSEDE NESSAFKENP HPDKKIIEEL AKKLGMGTKQ SQSEKHEHEL 60 LKQQNDQLRL EKITLEEAMK NPVCNRCGSQ ASLTDVNIDE HQAKIEHEHL KNEVKSITLL 120 AKKLLVPLAS LEGSTHLVME NSGSVFVGGK NGFGDINSVE TQLPTGIDLN NDPPSPLPVT 180 PPQPTASLAN VDVSYDKSKL MDLAVAAMNE LLRLAEIGEP LWVRSLDGGG EILSLEEYVC 240 SFTPCTGMKP RHFTTEATKA SAIVIINSLT LVETLMDGSR WVEMFSCNVG KTSAADVISS 300 CSIGSWSGTL KLVFSFSYYF AGIHTSCSQP GDIGNCRRLP SGCIIQDMPN GYSKITWIEH 360 MEYNESVVHH LYRPLVRNGL GFGAQRWMAT LQRMSEFKAV MMSPVNATGD HAGSIIVPFF 420 LTLSDLYMCM IISGSDEVPY VAVVCSSGRR SIAVLAQRMA RSFCGGVCAT LHKWDPIQEA 480 DGEDARLMIR RNIGDPGELT GVILSATKTI WLPVKQHRLI EFLLNKEKRS QWDVSYSDPL 540 KHMVDIAKGQ NLENSISLFR ADEDDTNADR NSKLILQDTS SDATGFLLVY ATIDTSAMNV 600 VMDGGDSSSV AFLPSGISIV PDYFQDFSSA SNSTGTSHGF SCTGSLVTIG FQILVNSLPT 660 AKLKIQSVKK VNDLIARTIK GIRAAFKCE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449095.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
TrEMBL | A0A1J6IMV4 | 0.0 | A0A1J6IMV4_NICAT; Homeobox-leucine zipper protein anthocyaninless 2 | ||||
STRING | XP_009771833.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15318 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-163 | homeodomain GLABROUS 1 |