PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01027g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21682.9 Da PI: 4.1904 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT++Ed++l+ ++++ G g+W++ ++ Peinf101Scf01027g00022.1 14 KGPWTPDEDQILISYIRKNGHGNWRALPKQ 43 79***********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.224 | 9 | 43 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.22E-8 | 10 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-8 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.08E-5 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVRAPCCEKM GLKKGPWTPD EDQILISYIR KNGHGNWRAL PKQADTIIQS HEMLGNSDTQ 60 KIINSPQHSS SEISTVTAES VVMTQSQAIN DHDQMMIKHE EMESSEYFPE IDESFWTDEL 120 STDNNCNHVM TAGNEIATHF NDEESRVPFS RVREENVDML TTRMEDDMDF WYNEFIKTDD 180 LQELPEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028650 | 1e-38 | AB028650.1 Nicotiana tabacum mRNA for myb-related transcription factor LBM2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312384.1 | 1e-64 | myb-related protein Myb4-like | ||||
Refseq | XP_009802252.1 | 1e-64 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U7YDQ0 | 3e-63 | A0A1U7YDQ0_NICSY; myb-related protein Myb4-like | ||||
TrEMBL | Q9SLT1 | 3e-63 | Q9SLT1_TOBAC; Myb-related transcription factor LBM2 | ||||
STRING | XP_009802252.1 | 5e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 5e-24 | myb domain protein 14 |