PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00997g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 365aa MW: 41470 Da PI: 9.0342 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.2 | 3.9e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Peinf101Scf00997g00004.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************997 PP | |||||||
2 | QLQ | 60.6 | 4.3e-21 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ Peinf101Scf00997g00004.1 11 PFTASQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45 9*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-11 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.234 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-16 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MMSTTARSRY PFTASQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSLDS ALSSKLILHQ 60 PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EVMTLANNTT TNTSTRPVVT TNTPPTAIPI SSITKNTNNN PSPCSPTSFP NYMTSSADQS 180 HQYPFLYPHS SSSRPPGSGI SLSSSTHDHT TKYLFESGPY SRNSYGDGMK EEVDEHVFFS 240 EASVGTMRSS TSSVEDTTWQ LSPLTMGSPM KQRTYSLSQN STAHSSNYLQ LQSLNESSRQ 300 HIDNAEDHQQ QPKKVMHHFF DEWPPKDNKD SWLDSEDKFS GHSKTQLSIS IPNSSQDFFI 360 HRNGK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 3e-65 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 3e-65 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449439.1 | 1e-170 | PREDICTED: growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A1S3YBF2 | 1e-168 | A0A1S3YBF2_TOBAC; growth-regulating factor 1-like isoform X1 | ||||
STRING | XP_009767378.1 | 1e-168 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-61 | growth-regulating factor 5 |