PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00990g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 28208.1 Da PI: 6.6241 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.2e-10 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g W++eEde+lv+ ++++G g+W+++++ Peinf101Scf00990g01012.1 14 KGLWSPEEDEKLVKHITKYGHGCWSSVPKLA 44 678************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 6 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.94E-8 | 7 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.415 | 9 | 54 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-7 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-6 | 17 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLVKHIT KYGHGCWSSV PKLADSNDQL NFIEAHESIS 60 KHIGIATEKS STLSTMTNNM DRYPLIHETN NIVPPTHEFF TKSPHDLASY FSFQQLNNYS 120 PNSIGLSMTN SNTNNLIFNN STNSKNSHDM VSDQFNSCTM ASDPEEIKWS EYMQTPYLLS 180 ANHHQMSQHQ DLYGEAKSEA QFITQGSLNL SNTTWLHQSQ HEQSSLQTAD LYNKNFQRLP 240 AAYGQYS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.2 | 5e-25 | myb domain protein 55 |