PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00986g00014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 656aa    MW: 73984 Da    PI: 5.3172
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00986g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.3e-22108207197
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+kvlt sd+ ++  l++p k + ++         k++  ++l+++d+sg +W++k+ + ++++r++lt+GW+ Fv++++L +gD
  Peinf101Scf00986g00014.1 108 FCKVLTASDTKSNWGLSIPQKDVVKCfpvldmsRDKPT--QELMVKDLSGMEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVAGD 190
                               99*****************************8543433..48******************************************* PP

                               EEEEEE-SSSEE..EEEEE CS
                        B3  79 fvvFkldgrsefelvvkvf 97 
                                vvF +   +++  +++++
  Peinf101Scf00986g00014.1 191 LVVFLR--GENGDVHIGFR 207
                               *****3..36776688776 PP
2Auxin_resp28.37.7e-11233284154
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 
                               a++a++ + +F+v+ +P++  s+F+++++k+++a+++ + v m fkm     +s
  Peinf101Scf00986g00014.1 233 ASDALAAQRPFSVYCKPQT--SQFIISLNKYLEAINRGLGVSMTFKMPSGVANS 284
                               5678999**********95..9*************************8766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-28103212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-34104217IPR015300DNA-binding pseudobarrel domain
CDDcd100177.85E-20106207No hitNo description
PfamPF023621.6E-19108207IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746108210IPR003340B3 DNA binding domain
SMARTSM010197.6E-18108210IPR003340B3 DNA binding domain
PfamPF065072.1E-8233284IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MWSIKQNHVT SEGDDGLYRE LWKAFAGPSM EIPRVGELVY YFPGVHIQQG DILLLFMRLN  60
ITAEYLEGVL QINVHETYDS VLCNTVQQTE PTNPDFCHEL QMPQIHSFCK VLTASDTKSN  120
WGLSIPQKDV VKCFPVLDMS RDKPTQELMV KDLSGMEWRF KHVFGGHPRR HLLTNGWSAF  180
VNSKKLVAGD LVVFLRGENG DVHIGFRHES CQKSSIEVPT ASSLDIKGVL AVASDALAAQ  240
RPFSVYCKPQ TSQFIISLNK YLEAINRGLG VSMTFKMPSG VANSHESFAC TTNEKGQMEI  300
NRFLHNTNEY LNEDGEQMED AEAIVYSPPQ HCIAPSEIGE KRHSDTIYLP PVKGNVQSGE  360
ESKPEHNEVL NPAEIVTIRG TEERKASTSS SRSFNPIQEE DLEGAEIIKD ILPIVSQNLP  420
LDYLMSSNTE NEDFLPIMQD SDRWQNVQGT DFPLPVRSPS GNHEMQTFSL KDQQSSSKVV  480
HPTSISSQIP YEGPGHADEK VHWEGYHVAR RYIPILNKLI SHYPCTLSSF KATSSIFQSM  540
CLEILAELVY LLGQFTMGSM DIKYLSEAKR FLRDLKLSGV EIGWLEKRLA KVEDVFTMKR  600
LSIRRQELIL GIEDTMATLR LMNEELGSLN KELQKLSSEI NVTTPAEDHS ILEGLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-661527717296Auxin response factor 1
4ldw_A3e-661527717296Auxin response factor 1
4ldw_B3e-661527717296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230990.10.0PREDICTED: uncharacterized protein LOC109211859 isoform X1
TrEMBLA0A314KI650.0A0A314KI65_NICAT; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1534468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.13e-72auxin response factor 11