PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00986g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 718aa MW: 80302.1 Da PI: 6.3128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.3 | 3.4e-19 | 42 | 142 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kvlt sd++++ l+l ++ + ++ +++k+ + +l+ +d+ +W++ + ++++++r++ltkGW++Fv ++L +gD+ Peinf101Scf00986g00010.1 42 FCKVLTASDTNSNWGLTLRRDDVIRCfppldiSKQKPIQ-DLIAKDLYDCEWRFSHVFQGQPRRHLLTKGWRKFVATKRLVAGDS 125 99****************************985566664.8******************************************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F + ++el+v+v+r Peinf101Scf00986g00010.1 126 VIFLR--GGNGELCVGVRR 142 ****4..378999****98 PP | |||||||
2 | B3 | 60.3 | 3.4e-19 | 277 | 377 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kvlt sd++++ l+l ++ + ++ +++k+ + +l+ +d+ +W++ + ++++++r++ltkGW++Fv ++L +gD+ Peinf101Scf00986g00010.1 277 FCKVLTASDTNSNWGLTLRRDDVIRCfppldiSKQKPIQ-DLIAKDLYDCEWRFSHVFQGQPRRHLLTKGWRKFVATKRLVAGDS 360 99****************************985566664.8******************************************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F + ++el+v+v+r Peinf101Scf00986g00010.1 361 VIFLR--GGNGELCVGVRR 377 ****4..378999****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-32 | 36 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-25 | 37 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.10E-18 | 40 | 142 | No hit | No description |
Pfam | PF02362 | 2.8E-16 | 42 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-16 | 42 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 42 | 144 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-32 | 271 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-25 | 272 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.10E-18 | 275 | 377 | No hit | No description |
Pfam | PF02362 | 2.8E-16 | 277 | 377 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-16 | 277 | 379 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 277 | 379 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MVESDTDEVY ARITLLPEKN QSEQTSAEAW CPEPLNSQLH SFCKVLTASD TNSNWGLTLR 60 RDDVIRCFPP LDISKQKPIQ DLIAKDLYDC EWRFSHVFQG QPRRHLLTKG WRKFVATKRL 120 VAGDSVIFLR GGNGELCVGV RRPAHQRYDV GSSLVSSQTV QGVLPVVSHA FATGSLFLVH 180 YQPRTSGCIL SLRKYLEPNR ETPSNPNLAQ IASDDLSTNH ISVNDLDCDV FSDIFLAPHS 240 HFVESTLETN RNGTGQSEQT SAEAWCPEPL NSQLHSFCKV LTASDTNSNW GLTLRRDDVI 300 RCFPPLDISK QKPIQDLIAK DLYDCEWRFS HVFQGQPRRH LLTKGWRKFV ATKRLVAGDS 360 VIFLRGGNGE LCVGVRRPAH QRYDVGSSLV SSQTVQGVLP VVSHAFATGS LFLVHYQPRT 420 SGCILSLRKY LEPNRETPSN PNLAQIASDD LSTNHISVND LDCDVFSDIF LAPHSHFVES 480 TLETNRNGTG VASTVPILLL DLEGWPESQR ESFPTYPQQP VPEPSMTTST SVQPTDTFQL 540 MCSYSNPNQP PTEVPSCGGE QVSWAGCQVA KRCLPILNRV IMRYPSTISG FKAVTGALQS 600 VYLEMLAKLI DLLEQTRIGS MKNMDQFQVI KQYLADLKFI GIDISWIETR LEQVDVVFKV 660 EKLIQHQHTL AHRIEETQFI LGQLQEEDGS VTKELEELTP KVGLSLPSKD CSILEGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-62 | 2 | 432 | 84 | 282 | Auxin response factor 1 |
4ldw_A | 1e-62 | 2 | 432 | 84 | 282 | Auxin response factor 1 |
4ldw_B | 1e-62 | 2 | 432 | 84 | 282 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504321.1 | 0.0 | PREDICTED: uncharacterized protein LOC107822302, partial | ||||
Swissprot | Q94JM3 | 5e-61 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A1S4CT83 | 0.0 | A0A1S4CT83_TOBAC; Auxin response factor | ||||
STRING | XP_009588924.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14681 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 2e-63 | auxin response factor 2 |