PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00985g07006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 773aa    MW: 87599.3 Da    PI: 6.0025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00985g07006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92.1e-1144007711374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+ 
  Peinf101Scf00985g07006.1 400 LRTLLISCAQAVAADDSRSANELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALINKRTS---AADLLKAHHLYL 481
                               6789************************************************************888888...89********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 +P+ k+s ++ N++I   +e+++r+H+iDf+i +G QWp+++q La R++gpp++RiTg++ p++g   +e++eetg+rLa++
  Peinf101Scf00985g07006.1 482 ASCPFRKISSFASNKTIQIKAENATRIHVIDFGILYGYQWPTFFQRLAIREGGPPKVRITGIDFPQPGfrPAERIEETGRRLADY 566
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfe+++ +ak++e++++e+L ++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + +  ++++ F
  Peinf101Scf00985g07006.1 567 AQSFNVPFEYHA-IAKKWESIRIEDLTLDKDEFLVVNCLFRFKNLHDETVVVDSSRTVVLNLIRKINPDIFIHGNINGAYSAPFF 650
                               ************.7*********************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal ++s+lfd+le+ +pre  er  +Ere++gre+ nv+aceg er+er et+++W++r+  a F+++p++ + +++a 
  Peinf101Scf00985g07006.1 651 VTRFREALFHFSSLFDMLETVVPREIPERGLIEREVFGREALNVIACEGWERVERPETYKQWQARIIGARFTQIPFEREFMNKAV 735
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++  + + + ++e+s++++lgWk+r+++++S+W+
  Peinf101Scf00985g07006.1 736 EKVKLGYHRDFVIDEDSKWILLGWKGRTIYALSCWK 771
                               *****99999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.445374751IPR005202Transcription factor GRAS
PfamPF035147.3E-112400771IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MDPRFNGNSS SLNDFRLGNE PLPISSDGRM IIGPRFELIY SDQKLHYGPR VLENSFVQHN  60
FGAVGYVNSD HLPSNVGPTY HLQSNVGSTS DPGAEDDFGE DIDFSDAVLS YINRMLMEED  120
MEDKTDMLQE SLELQVKEKS FYEALGKKYP PSPEQQRVNE QNNESPDDYC SGSLYNSSSY  180
TSDSSGYLFD SRVVNISTNY SSSYADGLPV HNTSYSSVCS SNSGNNFVDG FIDSPISHFR  240
IPDIYNESQS VWNFRKGVEE ASKFLPTNKT LLNNVYMNDL PALEPQGEIG DVVAQVEKKD  300
EGETSPTEAR GRKNPQRDDK YIEEERSSKQ AAVFTESIVR SEEFDRVLLH SMGKGEEVLE  360
AYRQDLRNAK SKSTVQKSKG PAGGKARGKK QGMKKEVIDL RTLLISCAQA VAADDSRSAN  420
ELLKQIRQHS SPFGDGNQRL AHCFADGLEA RLAGTGSQIY KALINKRTSA ADLLKAHHLY  480
LASCPFRKIS SFASNKTIQI KAENATRIHV IDFGILYGYQ WPTFFQRLAI REGGPPKVRI  540
TGIDFPQPGF RPAERIEETG RRLADYAQSF NVPFEYHAIA KKWESIRIED LTLDKDEFLV  600
VNCLFRFKNL HDETVVVDSS RTVVLNLIRK INPDIFIHGN INGAYSAPFF VTRFREALFH  660
FSSLFDMLET VVPREIPERG LIEREVFGRE ALNVIACEGW ERVERPETYK QWQARIIGAR  720
FTQIPFEREF MNKAVEKVKL GYHRDFVIDE DSKWILLGWK GRTIYALSCW KPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-503837721379Protein SCARECROW
5b3h_D3e-503837721379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758867.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_016434704.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S3X4500.0A0A1S3X450_TOBAC; scarecrow-like protein 9
TrEMBLA0A1U7US070.0A0A1U7US07_NICSY; scarecrow-like protein 9
STRINGXP_009758867.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein