PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00979g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | AP2 | ||||||||
Protein Properties | Length: 398aa MW: 45583.8 Da PI: 9.6612 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.6e-15 | 77 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g Peinf101Scf00979g00024.1 77 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 136 789******************888855555447*************************98 PP | |||||||
2 | AP2 | 40.1 | 9.3e-13 | 179 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg t eeAa+a++ a+ +++g Peinf101Scf00979g00024.1 179 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLG---TQEEAARAYDIAAIEYRG 227 89****99**********99966...3.5****77...89**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-16 | 77 | 146 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-12 | 77 | 136 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.87E-20 | 77 | 146 | No hit | No description |
PROSITE profile | PS51032 | 19.388 | 78 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-25 | 78 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-15 | 78 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 79 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-21 | 179 | 237 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-13 | 179 | 237 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-8 | 179 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-20 | 180 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-13 | 180 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.183 | 180 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 217 | 237 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MDLNQSVKSE TSSPGKRSMC MVDYEIPETT KRVKRRRRSP PAVALNDNIG QQGEQQKMDS 60 PKADQNIAQT PTVKRSSRFR GVSRHRWTGR YEAHLWDKGS WNVTQKKKGK QVYLGAYDEE 120 ESAARAYDLA AIKYWGTSTF TNFPISDYEK EIEIMQNVTR EEYLASLRRR SSGFARGVSK 180 YRGVARHHHN GRWEARIGRV FGNKYLYLGT QEEAARAYDI AAIEYRGINA VTNFDLSTYI 240 RWLKPGANSQ MAFQDLRSDT HQALPTNTDE TINQIHDPQF SFNSNYFTTT SETLPPVPQS 300 QEPIERKMPL SPCNKSSSPT ALSLLLRSSM YRELVEKNST AASEKEESNM KNKQQSNTED 360 EFVFYSSGKL PTLESLEKGN SSRLCDRRAE QSFWNVMP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248724.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A3Q7GWA6 | 0.0 | A0A3Q7GWA6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g066390.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3440 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 6e-90 | AP2 family protein |