PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00976g07005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YA
Protein Properties Length: 318aa    MW: 34695.4 Da    PI: 9.8467
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00976g07005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.41e-27153207258
                 CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hA+rRpRg+gGrF
  Peinf101Scf00976g07005.1 153 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 207
                               69*******************9666.555.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-30150210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.964151210IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-23154207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-21154176IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-21184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTMHTIFSKG NEGLGGQNGV ATSLSTTAPW WNSGLVSQSM AYAHHEPFGQ LKSASATKQQ  60
AELPKGINAT EFTIFSGDCK LSANGQKLSN IQGATSVHSA NMDNQGHLEL GFSQPLISAK  120
YPYGEQCIGL FSAYSPQLSG RIMLPLNMAS DEGPIFVNAK QYHGILRRRK SRAKEMEKKA  180
LKPRKPYLHL SRHLHAMRRP RGCGGRFLNT KSMKGSMKGG KTNDTGECQY FYPTGSQNSE  240
VLQSDSSNLS SPKEITGSRF CDSSEVTNMY SRGNLDPFPF QNLRPSVQAI PDMMNTGHGI  300
LMAGKWVSAA DSCCNLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-16152208260HAPB protein
4g92_A3e-16152208260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897580.0AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249303.11e-180PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X3
TrEMBLA0A1J6J6P31e-179A0A1J6J6P3_NICAT; Nuclear transcription factor y subunit a-2
STRINGPGSC0003DMT4000550611e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.29e-48nuclear factor Y, subunit A10