PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00975g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25062.1 Da PI: 6.5325 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.6 | 3.8e-19 | 18 | 59 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+i+n+ r+vtfskRr g++KKA+EL++L +ae+a+i+ s Peinf101Scf00975g01012.1 18 KPIDNENSRHVTFSKRRFGLFKKASELCILSGAEIAIIVQSL 59 68*************************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.689 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-24 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-23 | 11 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.94E-31 | 11 | 86 | No hit | No description |
PRINTS | PR00404 | 8.4E-13 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-19 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-13 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-13 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNVNTVKKTQ GRRKIAIKPI DNENSRHVTF SKRRFGLFKK ASELCILSGA EIAIIVQSLK 60 RRRLFAFGHP SVDAVIDRYV NGKSSSTRAD QSNNVQQNNQ YYSKICRELE EEKKKRKEEE 120 VIEETKILND GGFWWDKPTD DMGIEELEGF MTALEELKKN VTMRADELSM INGSSVHASS 180 SNSTRFGVED QYLNQAMDYY ASNVPFDFDH QVGDEGQFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231377.1 | 1e-105 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 1e-104 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106700.2.1 | 1e-105 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-31 | AGAMOUS-like 62 |