PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00974g12008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 298aa MW: 33628.7 Da PI: 4.909

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00974g12008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.2e-16	78	130	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g t ++Ia++++ Rt++++k++w+++l Peinf101Scf00974g12008.1 78 KGPWTPEEDIMLVSYVQEHGPGnwravpTKTAIASYLP-ERTDNDIKNYWNTHL 130 79******************4444444445667777.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-23	69	136	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-16	72	136	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.491	73	134	IPR017930	Myb domain
SMART	SM00717	8.3E-14	77	132	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-15	78	130	IPR001005	SANT/Myb domain
CDD	cd00167	3.59E-13	80	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGQQQWVGKG PYLWLSMVEI FCGKQAGVEK SSWDFGRSNC IANIECHAKD KPRKESLEEY 60 SAENMGRPPC CDKVGVKKGP WTPEEDIMLV SYVQEHGPGN WRAVPTKTAI ASYLPERTDN 120 DIKNYWNTHL KKKLKKLQET GDDLFSRENG YFSSSNSTSK GQWERTLQAD INMAKQALHN 180 ALTLENLSPC VKQESQVSTY ASSTENIARL LKGWMGEIGL MESFKSLFGF ESFESSSSDQ 240 FSQTPSPDAS KLKGEIKKEA NEQMPLSVML ENWLLDENTI QGKDDLSNFS FDETADLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122544	2e-34	AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBank	AC226507	2e-34	AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBank	EU161283	2e-34	EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBank	HG975441	2e-34	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	2e-34	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629125.1	1e-122	PREDICTED: myb-related protein 306-like isoform X2
Refseq	XP_016432585.1	1e-122	PREDICTED: myb-related protein 306-like
Swissprot	P81392	3e-57	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1S3WY16	1e-120	A0A1S3WY16_TOBAC; myb-related protein 306-like
STRING	XP_009629125.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-54	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]