PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00968g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 218aa MW: 23933.3 Da PI: 4.584 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed++l+d++k +G g W+ +++ g Peinf101Scf00968g01003.1 14 KGAWTPMEDKILIDYIKVHGEGKWRNLPKKAG 45 79************************999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-12 | 5 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.41E-7 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 9 | 57 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.3E-6 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-5 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRRPCCSKE GLNKGAWTPM EDKILIDYIK VHGEGKWRNL PKKAGSGSSL SSSASPCLVV 60 RTKAMRCTKV FIPTPKNTNH DDSITTNYNN DDTHDDDKVM AVETTTAVAS SSSSFSLSSI 120 LSEQQPISGS SPVSLSGDQF MENNFNFMFN FDMDDPFLSE LLNAAENTSA IGGDQVGDSF 180 NRNEKERSYF PPSSSQSALF SEETQHNDLE LWINGFSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254197 | 2e-31 | AC254197.3 Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-22m10 map 12, complete sequence. | |||
GenBank | HG975451 | 2e-31 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 2e-31 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230335.1 | 3e-41 | PREDICTED: myb-related protein 330-like isoform X1 | ||||
TrEMBL | A0A314KL89 | 7e-40 | A0A314KL89_NICAT; Anthocyanin regulatory c1 protein | ||||
STRING | XP_009602508.1 | 4e-38 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-13 | myb domain protein 3 |