PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00967g03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 178aa MW: 20612.9 Da PI: 7.2354 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 15 | 70 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ ++t++q++ Le F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k+ Peinf101Scf00967g03002.1 15 CHKKRLTQDQVRLLEISFNSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKN 70 567789************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.261 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-18 | 14 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-18 | 15 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.8E-17 | 16 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.89E-15 | 16 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-20 | 18 | 78 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-6 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDFFNSQTRK NHLKCHKKRL TQDQVRLLEI SFNSNNKLDS DRKSQLAQEL GLPPRQVAIW 60 YQNKRARWKN QSLEVDYKTL QQRLDNVQAD SDRLKLEVEK LREELNKSQQ ILLAFNTTTY 120 SSISSSCDEV GSSCLQLHDQ SGHHDQHNLD KELYACLIGD EGHFGTNDGH NFFASSMS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 18 | RKNHLKCHKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800499.1 | 1e-107 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1J6IZQ9 | 1e-107 | A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52 | ||||
STRING | XP_009800499.1 | 1e-107 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-26 | homeobox protein 52 |