PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00962g15028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23693 Da PI: 4.3032 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg W++eEde+l+++++ +G g+W+ ++++ Peinf101Scf00962g15028.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEK 43 788************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-13 | 6 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.039 | 9 | 43 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.68E-8 | 10 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-7 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.15E-6 | 17 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAEIIFTQ DLGVTKSQLL 60 QDSALFTSPN PLFNFDSGNS LETMTNNAND RSTNASLFQE TSVLNSEFWQ VDLQQQVHTS 120 YTTGIHSNYL PPLLEMPHME VPSSNNNMMV EGQDHHQLNE WNMDTQQCCP SYLFWDQETG 180 TLGGDHEFVD PNNTSNNIGQ ILSSFPSSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 5e-41 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343934.1 | 3e-56 | PREDICTED: transcription factor MYB21 | ||||
TrEMBL | A0A1U7XM01 | 8e-51 | A0A1U7XM01_NICSY; transcription repressor MYB6-like | ||||
STRING | XP_009793072.1 | 1e-51 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12439 | 17 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 2e-27 | myb domain protein 103 |