PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00959g06016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 242aa MW: 26814.2 Da PI: 4.7955 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.8 | 4.8e-16 | 123 | 159 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ Peinf101Scf00959g06016.1 123 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 159 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.0E-5 | 23 | 58 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.221 | 23 | 58 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.6E-9 | 27 | 57 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 9.901 | 88 | 130 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-11 | 88 | 119 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.682 | 117 | 176 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.9E-12 | 117 | 170 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-11 | 120 | 166 | No hit | No description |
CDD | cd00202 | 1.70E-15 | 122 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 122 | 164 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.5E-14 | 123 | 159 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 123 | 150 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEEEGDGGAY DDEETMDEAE EEVSRRSSEL TLAFEGEVYV FPAVTPEKVQ AVLLLLGGCD 60 IPTAVPTDEV PFDNKVENLL KQANLSRRFA SLVRFREKRK ERCFDKKIRY SVRKEVAQSP 120 GKCHHCGVSE NCTPAMRRGP DGPRTLCNAC GLKWANKGTL RDLSKGGRKS YVEPKRLGIP 180 DNPVKAFAEG SLDHCADVEK YPFLVQNLFS TESNLANEIP VGIISSSPNL VEQDTLVDFG 240 ND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU041360 | 9e-49 | CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 9e-49 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 9e-49 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759907.1 | 1e-128 | PREDICTED: GATA transcription factor 24-like | ||||
Refseq | XP_016508029.1 | 1e-128 | PREDICTED: GATA transcription factor 19-like | ||||
Swissprot | A2XKR7 | 1e-49 | GAT18_ORYSI; GATA transcription factor 18 | ||||
TrEMBL | A0A3Q7H0U6 | 1e-128 | A0A3Q7H0U6_SOLLC; Uncharacterized protein | ||||
STRING | XP_009759907.1 | 1e-128 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5602 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-49 | ZIM-like 1 |