PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00939g02015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 316aa    MW: 35606.2 Da    PI: 8.2769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00939g02015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14115166155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Peinf101Scf00939g02015.1 115 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 166
                               79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.06E-14113170No hitNo description
PROSITE profilePS5088815.815114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17114181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MALETVVFQQ DPFTYTYNKD FYNLGGGTNF HDYGFAFDKQ SIVQSPNNGY NWDSCNSSSI  60
AENSYNNNIN SSPEVCTGGL LPVEYAAPVE TSPVSGLRKR RRTKCSKNKE EIENQRMTHI  120
AVERNRRRQM NDYLAVLRSL MPPSYAQRGD QASIVGGAIN FVKELEQLLQ FLEAHKRVKN  180
QLPPNNASHH PFSKFFTFRQ YSTVNNNHQM AATNYSGAAT GGRRSAVADI EVTLVESHAN  240
VKVLSSRRPK QLLKIVNWFQ AMCLTILHLT VTTADHMVLY TFSVKVEDNC QLNTVSEIAT  300
AVHEMVAMIK EEAMCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
297102RKRRRT
3115126RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754509e-59HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256976.11e-156PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T46e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1J6HUB11e-155A0A1J6HUB1_NICAT; Transcription factor bhlh96
STRINGXP_009784356.11e-154(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]