PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00936g07008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Nin-like | ||||||||
Protein Properties | Length: 932aa MW: 103778 Da PI: 5.9223 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.3 | 3.7e-29 | 610 | 661 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Peinf101Scf00936g07008.1 610 AEKTITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 661 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.314 | 598 | 681 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-25 | 613 | 661 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.43E-22 | 825 | 914 | No hit | No description |
SMART | SM00666 | 1.2E-22 | 831 | 914 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 24.201 | 831 | 915 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.1E-21 | 832 | 910 | No hit | No description |
CDD | cd06407 | 1.39E-38 | 833 | 914 | No hit | No description |
Pfam | PF00564 | 1.4E-17 | 833 | 912 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 932 aa Download sequence Send to blast |
MDESVIPSNP LLPAPSDYLM DLDYMDELLL EGCWLETTDG NEFLQHSSST FSAPFDSSFM 60 WPTAIDANNV GFSEILSKDG QQEKQRSSFT ENLSISHCQG LNSAKVQSFG ENINNTMCTS 120 GQSENHLVEA PELNRRWWIG PKASSSVMDR LIWALGCIRD SSRDKGILLQ LWVPINRDGR 180 RLLTTNDQPF LLDLNCPRLA NYREVSVNYQ FPVNEDSKET VGLPGRVFAD KVPEWTPDVR 240 FFRREEYPRV GHAQECDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR PELESVCKAL 300 EAVDLRTSEV SSTQDAKVCD LSYQAALHEI LEVLKSACET HGLPLAQTWV PCIQQGKGGC 360 RHSEENLIHC VSTEDSACYV ADPHVQGFHE ACSEYHLLRG QGVVGRAFMT NQPCFSADLT 420 SYSKTEYPLS HHAKMFGLHA AVAIRLRSIE TGSSDFVLEF FLPSDCINPD GHKRMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETVSIGDVAN PSVIISSKEV RKHHKEQSET SQERTSWTSC 540 DVEFQESSAV ISAFKDEKPV EKLRTESVEF RHHNDSGSGI GFASNGDHNA SAEGVSRNPG 600 KGGDRRRTKA EKTITLQILQ QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK 660 VGHSLQKIQR VIDSVQGASG TLQIESFYSN FPELASPNVS KLSPFADSKS DEHPKALNTQ 720 QEGCFTSPHV AASKTTSSSG SQSSTSSQCC SSGTKPQSYP LNVAGNEDPM VQEESVDNAV 780 KRVKSEPELH LSSEALKTMP RSQSHAYFAE NPVSEGPLHM KDGPSKSQED APRVKVTHGE 840 EKIRFRMQNS WRYNELLREI TRRFGIDDPS GLHLKYLDDD SEWVLLTCDA DLEECLDICM 900 SSENQMIKLI LVRDSQHHLG SSFGSCSPLL VQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506272.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A1S4CYQ5 | 0.0 | A0A1S4CYQ5_TOBAC; protein NLP5-like | ||||
STRING | XP_009622679.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |