PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00930g08004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 198aa    MW: 21486.3 Da    PI: 8.5749
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00930g08004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.11.6e-2088122135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Peinf101Scf00930g08004.1  88 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 122
                               ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.8982118IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-1982134IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-1485123No hitNo description
Gene3DG3DSA:3.30.50.102.4E-1786122IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.09E-1387119No hitNo description
PfamPF003204.0E-1888122IPR000679Zinc finger, GATA-type
PROSITE patternPS00344088113IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYSYTSSSSV DCTLSLGTPS TRLSSSTNDN HEKRVQSHDT RSSSYMSKCW NILKSKNHNA  60
SSGPKSSRGS SNGNNNSSGA DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE  120
ERRASAAAAA TANSGGMGGG NYMDNTSWVH HNSQVQKNMP SCYSSSTYGS EFRFIEDDDH  180
ADSDNSIPFW PFMASQHC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508845.18e-87PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC797e-40GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A1S4D5Y82e-85A0A1S4D5Y8_TOBAC; GATA transcription factor 18-like
STRINGXP_009629630.15e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-35GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]